References analysis of the Wikipedia article "Кэп-анализ экспрессии генов" in the Russian version

doi.org

dx.doi.org

Shiraki T., Kondo S., Katayama S., Waki K., Kasukawa T., Kawaji H., Kodzius R., Watahiki A., Nakamura M., Arakawa T., Fukuda S., Sasaki D., Podhajska A., Harbers M., Kawai J., Carninci P., Hayashizaki Y. Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage (англ.) // Proceedings of the National Academy of Sciences. — 2003. — 8 December (vol. 100, no. 26). — P. 15776—15781. — ISSN 0027-8424. — doi:10.1073/pnas.2136655100. [исправить]

Carninci Piero, Sandelin Albin, Lenhard Boris, Katayama Shintaro, Shimokawa Kazuro, Ponjavic Jasmina, Semple Colin A M, Taylor Martin S, Engström Pär G, Frith Martin C, Forrest Alistair R R, Alkema Wynand B, Tan Sin Lam, Plessy Charles, Kodzius Rimantas, Ravasi Timothy, Kasukawa Takeya, Fukuda Shiro, Kanamori-Katayama Mutsumi, Kitazume Yayoi, Kawaji Hideya, Kai Chikatoshi, Nakamura Mari, Konno Hideaki, Nakano Kenji, Mottagui-Tabar Salim, Arner Peter, Chesi Alessandra, Gustincich Stefano, Persichetti Francesca, Suzuki Harukazu, Grimmond Sean M, Wells Christine A, Orlando Valerio, Wahlestedt Claes, Liu Edison T, Harbers Matthias, Kawai Jun, Bajic Vladimir B, Hume David A, Hayashizaki Yoshihide. Genome-wide analysis of mammalian promoter architecture and evolution (англ.) // Nature Genetics. — 2006. — 28 April (vol. 38, no. 6). — P. 626—635. — ISSN 1061-4036. — doi:10.1038/ng1789. [исправить]

Gustincich Stefano, Sandelin Albin, Plessy Charles, Katayama Shintaro, Simone Roberto, Lazarevic Dejan, Hayashizaki Yoshihide, Carninci Piero. The complexity of the mammalian transcriptome (англ.) // The Journal of Physiology. — 2006. — 24 August (vol. 575, no. 2). — P. 321—332. — ISSN 0022-3751. — doi:10.1113/jphysiol.2006.115568. [исправить]

Kanamori-Katayama M., Itoh M., Kawaji H., Lassmann T., Katayama S., Kojima M., Bertin N., Kaiho A., Ninomiya N., Daub C. O., Carninci P., Forrest A. R. R., Hayashizaki Y. Unamplified cap analysis of gene expression on a single-molecule sequencer (англ.) // Genome Research. — 2011. — 19 May (vol. 21, no. 7). — P. 1150—1159. — ISSN 1088-9051. — doi:10.1101/gr.115469.110. [исправить]

Vitezic Morana, Lassmann Timo, Forrest Alistair R. R., Suzuki Masanori, Tomaru Yasuhiro, Kawai Jun, Carninci Piero, Suzuki Harukazu, Hayashizaki Yoshihide, Daub Carsten O. Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE (англ.) // Nucleic Acids Research. — 2010. — 19 August (vol. 38, no. 22). — P. 8141—8148. — ISSN 0305-1048. — doi:10.1093/nar/gkq729. [исправить]

Frith M. C., Valen E., Krogh A., Hayashizaki Y., Carninci P., Sandelin A. A code for transcription initiation in mammalian genomes (англ.) // Genome Research. — 2007. — 21 November (vol. 18, no. 1). — P. 1—12. — ISSN 1088-9051. — doi:10.1101/gr.6831208. [исправить]

The FANTOM Consortium, Riken Omics Science Center. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line (англ.) // Nature Genetics. — 2009. — 19 April (vol. 41, no. 5). — P. 553—562. — ISSN 1061-4036. — doi:10.1038/ng.375. [исправить]

Faulkner Geoffrey J, Kimura Yasumasa, Daub Carsten O, Wani Shivangi, Plessy Charles, Irvine Katharine M, Schroder Kate, Cloonan Nicole, Steptoe Anita L, Lassmann Timo, Waki Kazunori, Hornig Nadine, Arakawa Takahiro, Takahashi Hazuki, Kawai Jun, Forrest Alistair R R, Suzuki Harukazu, Hayashizaki Yoshihide, Hume David A, Orlando Valerio, Grimmond Sean M, Carninci Piero. The regulated retrotransposon transcriptome of mammalian cells (англ.) // Nature Genetics. — 2009. — 19 April (vol. 41, no. 5). — P. 563—571. — ISSN 1061-4036. — doi:10.1038/ng.368. [исправить]

Head Steven R., Komori H. Kiyomi, LaMere Sarah A., Whisenant Thomas, Van Nieuwerburgh Filip, Salomon Daniel R., Ordoukhanian Phillip. Library construction for next-generation sequencing: Overviews and challenges (англ.) // BioTechniques. — 2014. — 1 February (vol. 56, no. 2). — ISSN 1940-9818. — doi:10.2144/000114133. [исправить]

Innocenti Nicolas, Golumbeanu Monica, Fouquier d'Hérouël Aymeric, Lacoux Caroline, Bonnin Rémy A., Kennedy Sean P., Wessner Françoise, Serror Pascale, Bouloc Philippe, Repoila Francis, Aurell Erik. Whole-genome mapping of 5′ RNA ends in bacteria by tagged sequencing: a comprehensive view inEnterococcus faecalis (англ.) // RNA. — 2015. — 3 March (vol. 21, no. 5). — P. 1018—1030. — ISSN 1355-8382. — doi:10.1261/rna.048470.114. [исправить]

Ettwiller Laurence, Buswell John, Yigit Erbay, Schildkraut Ira. A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome (англ.) // BMC Genomics. — 2016. — 8 March (vol. 17, no. 1). — ISSN 1471-2164. — doi:10.1186/s12864-016-2539-z. [исправить]

Mazin Pavel V., Fisunov Gleb Y., Gorbachev Alexey Y., Kapitskaya Kristina Y., Altukhov Ilya A., Semashko Tatiana A., Alexeev Dmitry G., Govorun Vadim M. Transcriptome analysis reveals novel regulatory mechanisms in a genome-reduced bacterium (англ.) // Nucleic Acids Research. — 2014. — 31 October (vol. 42, no. 21). — P. 13254—13268. — ISSN 1362-4962. — doi:10.1093/nar/gku976. [исправить]

Kawaji H., Lizio M., Itoh M., Kanamori-Katayama M., Kaiho A., Nishiyori-Sueki H., Shin J. W., Kojima-Ishiyama M., Kawano M., Murata M., Ninomiya-Fukuda N., Ishikawa-Kato S., Nagao-Sato S., Noma S., Hayashizaki Y., Forrest A. R. R., Carninci P., The FANTOM Consortium. Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing (англ.) // Genome Research. — 2014. — 27 March (vol. 24, no. 4). — P. 708—717. — ISSN 1088-9051. — doi:10.1101/gr.156232.113. [исправить]

Adiconis Xian, Haber Adam L., Simmons Sean K., Levy Moonshine Ami, Ji Zhe, Busby Michele A., Shi Xi, Jacques Justin, Lancaster Madeline A., Pan Jen Q., Regev Aviv, Levin Joshua Z. Comprehensive comparative analysis of 5′-end RNA-sequencing methods (англ.) // Nature Methods. — 2018. — 4 June (vol. 15, no. 7). — P. 505—511. — ISSN 1548-7091. — doi:10.1038/s41592-018-0014-2. [исправить]

Kodzius Rimantas, Kojima Miki, Nishiyori Hiromi, Nakamura Mari, Fukuda Shiro, Tagami Michihira, Sasaki Daisuke, Imamura Kengo, Kai Chikatoshi, Harbers Matthias, Hayashizaki Yoshihide, Carninci Piero. CAGE: cap analysis of gene expression (англ.) // Nature Methods. — 2006. — March (vol. 3, no. 3). — P. 211—222. — ISSN 1548-7091. — doi:10.1038/nmeth0306-211. [исправить]

Carninci Piero, Kvam Catrine, Kitamura Akiko, Ohsumi Tomoya, Okazaki Yasushi, Itoh Mitsuteru, Kamiya Mamoru, Shibata Kazuhiro, Sasaki Nobuya, Izawa Masaki, Muramatsu Masami, Hayashizaki Yoshihide, Schneider Claudio. High-Efficiency Full-Length cDNA Cloning by Biotinylated CAP Trapper (англ.) // Genomics. — 1996. — November (vol. 37, no. 3). — P. 327—336. — ISSN 0888-7543. — doi:10.1006/geno.1996.0567. [исправить]

Takahashi Hazuki, Lassmann Timo, Murata Mitsuyoshi, Carninci Piero. 5′ end–centered expression profiling using cap-analysis gene expression and next-generation sequencing (англ.) // Nature Protocols. — 2012. — 23 February (vol. 7, no. 3). — P. 542—561. — ISSN 1754-2189. — doi:10.1038/nprot.2012.005. [исправить]

Valen E., Pascarella G., Chalk A., Maeda N., Kojima M., Kawazu C., Murata M., Nishiyori H., Lazarevic D., Motti D., Marstrand T. T., Tang M.-H. E., Zhao X., Krogh A., Winther O., Arakawa T., Kawai J., Wells C., Daub C., Harbers M., Hayashizaki Y., Gustincich S., Sandelin A., Carninci P. Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE (англ.) // Genome Research. — 2008. — 3 December (vol. 19, no. 2). — P. 255—265. — ISSN 1088-9051. — doi:10.1101/gr.084541.108. [исправить]

Plessy Charles, Bertin Nicolas, Takahashi Hazuki, Simone Roberto, Salimullah Md, Lassmann Timo, Vitezic Morana, Severin Jessica, Olivarius Signe, Lazarevic Dejan, Hornig Nadine, Orlando Valerio, Bell Ian, Gao Hui, Dumais Jacqueline, Kapranov Philipp, Wang Huaien, Davis Carrie A, Gingeras Thomas R, Kawai Jun, Daub Carsten O, Hayashizaki Yoshihide, Gustincich Stefano, Carninci Piero. Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan (англ.) // Nature Methods. — 2010. — 13 June (vol. 7, no. 7). — P. 528—534. — ISSN 1548-7091. — doi:10.1038/nmeth.1470. [исправить]

Itoh Masayoshi, Kojima Miki, Nagao-Sato Sayaka, Saijo Eri, Lassmann Timo, Kanamori-Katayama Mutsumi, Kaiho Ai, Lizio Marina, Kawaji Hideya, Carninci Piero, Forrest Alistair R. R., Hayashizaki Yoshihide. Automated Workflow for Preparation of cDNA for Cap Analysis of Gene Expression on a Single Molecule Sequencer (англ.) // PLoS ONE. — 2012. — 30 January (vol. 7, no. 1). — P. e30809. — ISSN 1932-6203. — doi:10.1371/journal.pone.0030809. [исправить]

Batut P., Dobin A., Plessy C., Carninci P., Gingeras T. R. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression (англ.) // Genome Research. — 2012. — 30 August (vol. 23, no. 1). — P. 169—180. — ISSN 1088-9051. — doi:10.1101/gr.139618.112. [исправить]

Murata Mitsuyoshi, Nishiyori-Sueki Hiromi, Kojima-Ishiyama Miki, Carninci Piero, Hayashizaki Yoshihide, Itoh Masayoshi. Detecting Expressed Genes Using CAGE (англ.) // Transcription Factor Regulatory Networks. — 2014. — P. 67—85. — ISBN 9781493908042. — ISSN 1064-3745. — doi:10.1007/978-1-4939-0805-9_7. [исправить]

de Hoon Michiel, Hayashizaki Yoshihide. Deep cap analysis gene expression (CAGE): genome-wide identification of promoters, quantification of their expression, and network inference (англ.) // BioTechniques. — 2008. — April (vol. 44, no. 5). — P. 627—632. — ISSN 0736-6205. — doi:10.2144/000112802. [исправить]

Zhao Xiaobei, Valen Eivind, Parker Brian J., Sandelin Albin. Systematic Clustering of Transcription Start Site Landscapes (англ.) // PLoS ONE. — 2011. — 24 August (vol. 6, no. 8). — P. e23409. — ISSN 1932-6203. — doi:10.1371/journal.pone.0023409. [исправить]

Islam S., Kjallquist U., Moliner A., Zajac P., Fan J.-B., Lonnerberg P., Linnarsson S. Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq (англ.) // Genome Research. — 2011. — 4 May (vol. 21, no. 7). — P. 1160—1167. — ISSN 1088-9051. — doi:10.1101/gr.110882.110. [исправить]

lomonosov-msu.ru

Маргасюк Сергей Дмитриевич. Анализ корреляции между данными CAGE и концами генов. Конференция Ломоносов 2017 (2017). Дата обращения: 30 апреля 2019. Архивировано 30 апреля 2019 года.

web.archive.org

FANTOM. fantom.gsc.riken.jp. Дата обращения: 1 мая 2019. Архивировано из оригинала 2 ноября 2018 года.

SuperScript II Reverse Transcriptase - Thermo Fisher Scientific. www.thermofisher.com. Дата обращения: 1 мая 2019. Архивировано 1 мая 2019 года.

Efficient preparation of cDNA: PrimeScript Reverse Transcriptase. www.takarabio.com. Дата обращения: 1 мая 2019. Архивировано 1 мая 2019 года.

wikipedia.org

ru.wikipedia.org

worldcat.org

Biology. — 9th ed. — Dubuque, IA: McGraw-Hill, 2011. — С. 278—301. — xxvi, 1279, [97] pages с. — ISBN 9780073532226, 9780077350024, 0077350022, 0073532223, 9780071222068, 0071222065, 9780071327640, 0071327649.

Lieberman, Michael, 1950-. Chapter 14 // Marks' basic medical biochemistry : a clinical approach. — Fourth edition. — Philadelphia: Wolters Kluwer Health/Lippincott Williams & Wilkins, [2013]. — ix, 1014 pages с. — ISBN 9781608315727, 160831572X, 9781451100037, 1451100035.

Кэп-анализ экспрессии генов (Russian Wikipedia)

doi.org

dx.doi.org

lomonosov-msu.ru

riken.jp

fantom.gsc.riken.jp

takarabio.com

thermofisher.com

web.archive.org

wikipedia.org

ru.wikipedia.org

worldcat.org