References analysis of the Wikipedia article "Транскриптомика одиночных клеток" in the Russian version

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Haque Ashraful, Engel Jessica, Teichmann Sarah A., Lönnberg Tapio. A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications (англ.) // Genome Medicine. — 2017. — 18 August (vol. 9, no. 1). — ISSN 1756-994X. — doi:10.1186/s13073-017-0467-4. [исправить]

Herr Amy E., Kitamori Takehiko, Landegren Ulf, Kamali-Moghaddam Masood. Next wave advances in single-cell analyses (англ.) // The Analyst. — 2019. — Vol. 144, no. 3. — P. 735—737. — ISSN 0003-2654. — doi:10.1039/c9an90011j. [исправить]

Chen Haide, Ye Fang, Guo Guoji. Revolutionizing immunology with single-cell RNA sequencing (англ.) // Cellular & Molecular Immunology. — 2019. — 22 February (vol. 16, no. 3). — P. 242—249. — ISSN 1672-7681. — doi:10.1038/s41423-019-0214-4. [исправить]

Kumar Pavithra, Tan Yuqi, Cahan Patrick. Understanding development and stem cells using single cell-based analyses of gene expression (англ.) // Development. — 2017. — 1 January (vol. 144, no. 1). — P. 17—32. — ISSN 0950-1991. — doi:10.1242/dev.133058. [исправить]

Svensson Valentine, Vento-Tormo Roser, Teichmann Sarah A. Exponential scaling of single-cell RNA-seq in the past decade (англ.) // Nature Protocols. — 2018. — 1 March (vol. 13, no. 4). — P. 599—604. — ISSN 1754-2189. — doi:10.1038/nprot.2017.149. [исправить]

Hedlund Eva, Deng Qiaolin. Single-cell RNA sequencing: Technical advancements and biological applications (англ.) // Molecular Aspects of Medicine. — 2018. — February (vol. 59). — P. 36—46. — ISSN 0098-2997. — doi:10.1016/j.mam.2017.07.003. [исправить]

Hwang Byungjin, Lee Ji Hyun, Bang Duhee. Single-cell RNA sequencing technologies and bioinformatics pipelines (англ.) // Experimental & Molecular Medicine. — 2018. — August (vol. 50, no. 8). — ISSN 2092-6413. — doi:10.1038/s12276-018-0071-8. [исправить]

Kolodziejczyk Aleksandra A., Kim Jong Kyoung, Svensson Valentine, Marioni John C., Teichmann Sarah A. The Technology and Biology of Single-Cell RNA Sequencing (англ.) // Molecular Cell. — 2015. — May (vol. 58, no. 4). — P. 610—620. — ISSN 1097-2765. — doi:10.1016/j.molcel.2015.04.005. [исправить]

Zhang Xiannian, Li Tianqi, Liu Feng, Chen Yaqi, Yao Jiacheng, Li Zeyao, Huang Yanyi, Wang Jianbin. Comparative Analysis of Droplet-Based Ultra-High-Throughput Single-Cell RNA-Seq Systems (англ.) // Molecular Cell. — 2019. — January (vol. 73, no. 1). — P. 130—142.e5. — ISSN 1097-2765. — doi:10.1016/j.molcel.2018.10.020. [исправить]

White A. K., VanInsberghe M., Petriv O. I., Hamidi M., Sikorski D., Marra M. A., Piret J., Aparicio S., Hansen C. L. High-throughput microfluidic single-cell RT-qPCR (англ.) // Proceedings of the National Academy of Sciences. — 2011. — 1 August (vol. 108, no. 34). — P. 13999—14004. — ISSN 0027-8424. — doi:10.1073/pnas.1019446108. [исправить]

Sanchez-Freire Veronica, Ebert Antje D, Kalisky Tomer, Quake Stephen R, Wu Joseph C. Microfluidic single-cell real-time PCR for comparative analysis of gene expression patterns (англ.) // Nature Protocols. — 2012. — 5 April (vol. 7, no. 5). — P. 829—838. — ISSN 1754-2189. — doi:10.1038/nprot.2012.021. [исправить]

Everaert Celine, Luypaert Manuel, Maag Jesper L. V., Cheng Quek Xiu, Dinger Marcel E., Hellemans Jan, Mestdagh Pieter. Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data (англ.) // Scientific Reports. — 2017. — 8 May (vol. 7, no. 1). — ISSN 2045-2322. — doi:10.1038/s41598-017-01617-3. [исправить]

Kameishi Sumako, Umemoto Terumasa, Matsuzaki Yu, Fujita Masako, Okano Teruo, Kato Takashi, Yamato Masayuki. Characterization of rabbit limbal epithelial side population cells using RNA sequencing and single-cell qRT-PCR (англ.) // Biochemical and Biophysical Research Communications. — 2016. — May (vol. 473, no. 3). — P. 704—709. — ISSN 0006-291X. — doi:10.1016/j.bbrc.2015.10.155. [исправить]

Ziegenhain Christoph, Vieth Beate, Parekh Swati, Reinius Björn, Guillaumet-Adkins Amy, Smets Martha, Leonhardt Heinrich, Heyn Holger, Hellmann Ines, Enard Wolfgang. Comparative Analysis of Single-Cell RNA Sequencing Methods (англ.) // Molecular Cell. — 2017. — February (vol. 65, no. 4). — P. 631—643.e4. — ISSN 1097-2765. — doi:10.1016/j.molcel.2017.01.023. [исправить]

Gao Dan, Jin Feng, Zhou Min, Jiang Yuyang. Recent advances in single cell manipulation and biochemical analysis on microfluidics (англ.) // The Analyst. — 2019. — Vol. 144, no. 3. — P. 766—781. — ISSN 0003-2654. — doi:10.1039/c8an01186a. [исправить]

Svec David, Andersson Daniel, Pekny Milos, Sjöback Robert, Kubista Mikael, Ståhlberg Anders. Direct Cell Lysis for Single-Cell Gene Expression Profiling (англ.) // Frontiers in Oncology. — 2013. — Vol. 3. — ISSN 2234-943X. — doi:10.3389/fonc.2013.00274. [исправить]

Zhang Yi, Gao Jiaxin, Huang Yanyi, Wang Jianbin. Recent Developments in Single-Cell RNA-Seq of Microorganisms (англ.) // Biophysical Journal. — 2018. — July (vol. 115, no. 2). — P. 173—180. — ISSN 0006-3495. — doi:10.1016/j.bpj.2018.06.008. [исправить]

Zajac Pawel, Islam Saiful, Hochgerner Hannah, Lönnerberg Peter, Linnarsson Sten. Base Preferences in Non-Templated Nucleotide Incorporation by MMLV-Derived Reverse Transcriptases (англ.) // PLoS ONE. — 2013. — 31 December (vol. 8, no. 12). — P. e85270. — ISSN 1932-6203. — doi:10.1371/journal.pone.0085270. [исправить]

Chen Geng, Ning Baitang, Shi Tieliu. Single-Cell RNA-Seq Technologies and Related Computational Data Analysis (англ.) // Frontiers in Genetics. — 2019. — 5 April (vol. 10). — ISSN 1664-8021. — doi:10.3389/fgene.2019.00317. [исправить]

Kim Daehwan, Pertea Geo, Trapnell Cole, Pimentel Harold, Kelley Ryan, Salzberg Steven L. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions (англ.) // Genome Biology. — 2013. — Vol. 14, no. 4. — P. R36. — ISSN 1465-6906. — doi:10.1186/gb-2013-14-4-r36. [исправить]

Kim Daehwan, Langmead Ben, Salzberg Steven L. HISAT: a fast spliced aligner with low memory requirements (англ.) // Nature Methods. — 2015. — 9 March (vol. 12, no. 4). — P. 357—360. — ISSN 1548-7091. — doi:10.1038/nmeth.3317. [исправить]

Büttner Maren, Miao Zhichao, Wolf F. Alexander, Teichmann Sarah A., Theis Fabian J. A test metric for assessing single-cell RNA-seq batch correction (англ.) // Nature Methods. — 2018. — 20 December (vol. 16, no. 1). — P. 43—49. — ISSN 1548-7091. — doi:10.1038/s41592-018-0254-1. [исправить]

Bacher Rhonda, Chu Li-Fang, Leng Ning, Gasch Audrey P, Thomson James A, Stewart Ron M, Newton Michael, Kendziorski Christina. SCnorm: robust normalization of single-cell RNA-seq data (англ.) // Nature Methods. — 2017. — 17 April (vol. 14, no. 6). — P. 584—586. — ISSN 1548-7091. — doi:10.1038/nmeth.4263. [исправить]

Katayama Shintaro, Töhönen Virpi, Linnarsson Sten, Kere Juha. SAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization (англ.) // Bioinformatics. — 2013. — 31 August (vol. 29, no. 22). — P. 2943—2945. — ISSN 1460-2059. — doi:10.1093/bioinformatics/btt511. [исправить]

van Dijk David, Sharma Roshan, Nainys Juozas, Yim Kristina, Kathail Pooja, Carr Ambrose J., Burdziak Cassandra, Moon Kevin R., Chaffer Christine L., Pattabiraman Diwakar, Bierie Brian, Mazutis Linas, Wolf Guy, Krishnaswamy Smita, Pe’er Dana. Recovering Gene Interactions from Single-Cell Data Using Data Diffusion (англ.) // Cell. — 2018. — July (vol. 174, no. 3). — P. 716—729.e27. — ISSN 0092-8674. — doi:10.1016/j.cell.2018.05.061. [исправить]

Talwar Divyanshu, Mongia Aanchal, Sengupta Debarka, Majumdar Angshul. AutoImpute: Autoencoder based imputation of single-cell RNA-seq data (англ.) // Scientific Reports. — 2018. — 5 November (vol. 8, no. 1). — ISSN 2045-2322. — doi:10.1038/s41598-018-34688-x. [исправить]

Rostom R., Svensson V., Teichmann S. A., Kar G. Computational approaches for interpreting scRNA-seq data. (англ.) // FEBS Letters. — 2017. — August (vol. 591, no. 15). — P. 2213—2225. — doi:10.1002/1873-3468.12684. — PMID 28524227. [исправить]

Zhang X., Li T., Liu F., Chen Y., Yao J., Li Z., Huang Y., Wang J. Comparative Analysis of Droplet-Based Ultra-High-Throughput Single-Cell RNA-Seq Systems. (англ.) // Molecular Cell. — 2019. — 3 January (vol. 73, no. 1). — P. 130—142. — doi:10.1016/j.molcel.2018.10.020. — PMID 30472192. [исправить]

Ntranos Vasilis, Kamath Govinda M., Zhang Jesse M., Pachter Lior, Tse David N. Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts (англ.) // Genome Biology. — 2016. — 26 May (vol. 17, no. 1). — ISSN 1474-760X. — doi:10.1186/s13059-016-0970-8. [исправить]

Satija Rahul, Farrell Jeffrey A, Gennert David, Schier Alexander F, Regev Aviv. Spatial reconstruction of single-cell gene expression data (англ.) // Nature Biotechnology. — 2015. — 13 April (vol. 33, no. 5). — P. 495—502. — ISSN 1087-0156. — doi:10.1038/nbt.3192. [исправить]

Baran Yael, Sebe-Pedros Arnau, Lubling Yaniv, Giladi Amir, Chomsky Elad, Meir Zohar, Hoichman Michael, Lifshitz Aviezer, Tanay Amos. MetaCell: analysis of single cell RNA-seq data using k-NN graph partitions (англ.). — 2018. — 8 October. — doi:10.1101/437665. [исправить]

Zhang Jesse M., Fan Jue, Fan H. Christina, Rosenfeld David, Tse David N. An interpretable framework for clustering single-cell RNA-Seq datasets (англ.) // BMC Bioinformatics. — 2018. — 9 March (vol. 19, no. 1). — ISSN 1471-2105. — doi:10.1186/s12859-018-2092-7. [исправить]

Tung Po-Yuan, Blischak John D., Hsiao Chiaowen Joyce, Knowles David A., Burnett Jonathan E., Pritchard Jonathan K., Gilad Yoav. Batch effects and the effective design of single-cell gene expression studies (англ.) // Scientific Reports. — 2017. — 3 January (vol. 7, no. 1). — ISSN 2045-2322. — doi:10.1038/srep39921. [исправить]

Hicks Stephanie C, Townes F. William, Teng Mingxiang, Irizarry Rafael A. Missing Data and Technical Variability in Single-Cell RNA- Sequencing Experiments (англ.). — 2015. — 25 August. — doi:10.1101/025528. [исправить]

Chen Huidong, Albergante Luca, Hsu Jonathan Y., Lareau Caleb A., Lo Bosco Giosuè, Guan Jihong, Zhou Shuigeng, Gorban Alexander N., Bauer Daniel E., Aryee Martin J., Langenau David M., Zinovyev Andrei, Buenrostro Jason D., Yuan Guo-Cheng, Pinello Luca. Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM (англ.) // Nature Communications. — 2019. — 23 April (vol. 10, no. 1). — ISSN 2041-1723. — doi:10.1038/s41467-019-09670-4. [исправить]

Lall Snehalika, Sinha Debajyoti, Bandyopadhyay Sanghamitra, Sengupta Debarka. Structure-Aware Principal Component Analysis for Single-Cell RNA-seq Data (англ.) // Journal of Computational Biology. — 2018. — December (vol. 25, no. 12). — P. 1365—1373. — ISSN 1557-8666. — doi:10.1089/cmb.2018.0027. [исправить]

Kobak Dmitry, Berens Philipp. The art of using t-SNE for single-cell transcriptomics (англ.). — 2018. — 25 October. — doi:10.1101/453449. [исправить]

Wang Bo, Zhu Junjie, Pierson Emma, Ramazzotti Daniele, Batzoglou Serafim. Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning (англ.). — 2016. — 9 May. — doi:10.1101/052225. [исправить]

Becht Etienne, McInnes Leland, Healy John, Dutertre Charles-Antoine, Kwok Immanuel W H, Ng Lai Guan, Ginhoux Florent, Newell Evan W. Dimensionality reduction for visualizing single-cell data using UMAP (англ.) // Nature Biotechnology. — 2018. — 3 December (vol. 37, no. 1). — P. 38—44. — ISSN 1087-0156. — doi:10.1038/nbt.4314. [исправить]

Finak Greg, McDavid Andrew, Yajima Masanao, Deng Jingyuan, Gersuk Vivian, Shalek Alex K., Slichter Chloe K., Miller Hannah W., McElrath M. Juliana, Prlic Martin, Linsley Peter S., Gottardo Raphael. MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data (англ.) // Genome Biology. — 2015. — December (vol. 16, no. 1). — ISSN 1474-760X. — doi:10.1186/s13059-015-0844-5. [исправить]

Kharchenko Peter V, Silberstein Lev, Scadden David T. Bayesian approach to single-cell differential expression analysis (англ.) // Nature Methods. — 2014. — 18 May (vol. 11, no. 7). — P. 740—742. — ISSN 1548-7091. — doi:10.1038/nmeth.2967. [исправить]

Emmert-Streib Frank, Dehmer Matthias, Haibe-Kains Benjamin. Gene regulatory networks and their applications: understanding biological and medical problems in terms of networks (англ.) // Frontiers in Cell and Developmental Biology. — 2014. — 19 August (vol. 2). — ISSN 2296-634X. — doi:10.3389/fcell.2014.00038. [исправить]

Kotera Masaaki, Yamanishi Yoshihiro, Moriya Yuki, Kanehisa Minoru, Goto Susumu. GENIES: gene network inference engine based on supervised analysis (англ.) // Nucleic Acids Research. — 2012. — 14 June (vol. 40, no. W1). — P. W162—W167. — ISSN 0305-1048. — doi:10.1093/nar/gks459. [исправить]

Shmulevich I., Dougherty E. R., Kim S., Zhang W. Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks (англ.) // Bioinformatics. — 2002. — 1 February (vol. 18, no. 2). — P. 261—274. — ISSN 1367-4803. — doi:10.1093/bioinformatics/18.2.261. [исправить]

Zhang Xiujun, Zhao Xing-Ming, He Kun, Lu Le, Cao Yongwei, Liu Jingdong, Hao Jin-Kao, Liu Zhi-Ping, Chen Luonan. Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information (англ.) // Bioinformatics. — 2011. — 15 November (vol. 28, no. 1). — P. 98—104. — ISSN 1460-2059. — doi:10.1093/bioinformatics/btr626. [исправить]

Griffiths Jonathan A, Scialdone Antonio, Marioni John C. Using single‐cell genomics to understand developmental processes and cell fate decisions (англ.) // Molecular Systems Biology. — 2018. — April (vol. 14, no. 4). — ISSN 1744-4292. — doi:10.15252/msb.20178046. [исправить]

Saelens Wouter, Cannoodt Robrecht, Todorov Helena, Saeys Yvan. A comparison of single-cell trajectory inference methods (англ.) // Nature Biotechnology. — 2019. — 1 April (vol. 37, no. 5). — P. 547—554. — ISSN 1087-0156. — doi:10.1038/s41587-019-0071-9. [исправить]

Kowalczyk Monika S., Tirosh Itay, Heckl Dirk, Rao Tata Nageswara, Dixit Atray, Haas Brian J., Schneider Rebekka K., Wagers Amy J., Ebert Benjamin L., Regev Aviv. Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells (англ.) // Genome Research. — 2015. — 1 October (vol. 25, no. 12). — P. 1860—1872. — ISSN 1088-9051. — doi:10.1101/gr.192237.115. [исправить]

Tsang Jason C. H., Yu Yong, Burke Shannon, Buettner Florian, Wang Cui, Kolodziejczyk Aleksandra A., Teichmann Sarah A., Lu Liming, Liu Pentao. Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells (англ.) // Genome Biology. — 2015. — 21 September (vol. 16, no. 1). — ISSN 1474-760X. — doi:10.1186/s13059-015-0739-5. [исправить]

Treutlein Barbara, Brownfield Doug G., Wu Angela R., Neff Norma F., Mantalas Gary L., Espinoza F. Hernan, Desai Tushar J., Krasnow Mark A., Quake Stephen R. Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq (англ.) // Nature. — 2014. — 13 April (vol. 509, no. 7500). — P. 371—375. — ISSN 0028-0836. — doi:10.1038/nature13173. [исправить]

Shin Jaehoon, Berg Daniel A., Zhu Yunhua, Shin Joseph Y., Song Juan, Bonaguidi Michael A., Enikolopov Grigori, Nauen David W., Christian Kimberly M., Ming Guo-li, Song Hongjun. Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis (англ.) // Cell Stem Cell. — 2015. — September (vol. 17, no. 3). — P. 360—372. — ISSN 1934-5909. — doi:10.1016/j.stem.2015.07.013. [исправить]

Llorens-Bobadilla Enric, Zhao Sheng, Baser Avni, Saiz-Castro Gonzalo, Zwadlo Klara, Martin-Villalba Ana. Single-Cell Transcriptomics Reveals a Population of Dormant Neural Stem Cells that Become Activated upon Brain Injury (англ.) // Cell Stem Cell. — 2015. — September (vol. 17, no. 3). — P. 329—340. — ISSN 1934-5909. — doi:10.1016/j.stem.2015.07.002. [исправить]

Deng Q., Ramskold D., Reinius B., Sandberg R. Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells (англ.) // Science. — 2014. — 9 January (vol. 343, no. 6167). — P. 193—196. — ISSN 0036-8075. — doi:10.1126/science.1245316. [исправить]

Xue Zhigang, Huang Kevin, Cai Chaochao, Cai Lingbo, Jiang Chun-yan, Feng Yun, Liu Zhenshan, Zeng Qiao, Cheng Liming, Sun Yi E., Liu Jia-yin, Horvath Steve, Fan Guoping. Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing (англ.) // Nature. — 2013. — 28 July (vol. 500, no. 7464). — P. 593—597. — ISSN 0028-0836. — doi:10.1038/nature12364. [исправить]

Tang Fuchou, Barbacioru Catalin, Bao Siqin, Lee Caroline, Nordman Ellen, Wang Xiaohui, Lao Kaiqin, Surani M. Azim. Tracing the Derivation of Embryonic Stem Cells from the Inner Cell Mass by Single-Cell RNA-Seq Analysis (англ.) // Cell Stem Cell. — 2010. — May (vol. 6, no. 5). — P. 468—478. — ISSN 1934-5909. — doi:10.1016/j.stem.2010.03.015. [исправить]

Tang Fuchou, Barbacioru Catalin, Nordman Ellen, Bao Siqin, Lee Caroline, Wang Xiaohui, Tuch Brian B., Heard Edith, Lao Kaiqin, Surani M. Azim. Deterministic and Stochastic Allele Specific Gene Expression in Single Mouse Blastomeres (англ.) // PLoS ONE. — 2011. — 23 June (vol. 6, no. 6). — P. e21208. — ISSN 1932-6203. — doi:10.1371/journal.pone.0021208. [исправить]

Yan Liying, Yang Mingyu, Guo Hongshan, Yang Lu, Wu Jun, Li Rong, Liu Ping, Lian Ying, Zheng Xiaoying, Yan Jie, Huang Jin, Li Ming, Wu Xinglong, Wen Lu, Lao Kaiqin, Li Ruiqiang, Qiao Jie, Tang Fuchou. Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells (англ.) // Nature Structural & Molecular Biology. — 2013. — 11 August (vol. 20, no. 9). — P. 1131—1139. — ISSN 1545-9993. — doi:10.1038/nsmb.2660. [исправить]

Guo Fan, Yan Liying, Guo Hongshan, Li Lin, Hu Boqiang, Zhao Yangyu, Yong Jun, Hu Yuqiong, Wang Xiaoye, Wei Yuan, Wang Wei, Li Rong, Yan Jie, Zhi Xu, Zhang Yan, Jin Hongyan, Zhang Wenxin, Hou Yu, Zhu Ping, Li Jingyun, Zhang Ling, Liu Sirui, Ren Yixin, Zhu Xiaohui, Wen Lu, Gao Yi Qin, Tang Fuchou, Qiao Jie. The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells (англ.) // Cell. — 2015. — June (vol. 161, no. 6). — P. 1437—1452. — ISSN 0092-8674. — doi:10.1016/j.cell.2015.05.015. [исправить]

Biase Fernando H., Cao Xiaoyi, Zhong Sheng. Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing (англ.) // Genome Research. — 2014. — 5 August (vol. 24, no. 11). — P. 1787—1796. — ISSN 1088-9051. — doi:10.1101/gr.177725.114. [исправить]

Shi Junchao, Chen Qi, Li Xin, Zheng Xiudeng, Zhang Ying, Qiao Jie, Tang Fuchou, Tao Yi, Zhou Qi, Duan Enkui. Dynamic transcriptional symmetry-breaking in pre-implantation mammalian embryo development revealed by single-cell RNA-seq (англ.) // Development. — 2015. — 22 September (vol. 142, no. 20). — P. 3468—3477. — ISSN 0950-1991. — doi:10.1242/dev.123950. [исправить]

Packer Jonathan S., Zhu Qin, Huynh Chau, Sivaramakrishnan Priya, Preston Elicia, Dueck Hannah, Stefanik Derek, Tan Kai, Trapnell Cole, Kim Junhyong, Waterston Robert H., Murray John I. A lineage-resolved molecular atlas of C. elegans embryogenesis at single cell resolution (англ.). — 2019. — 1 March. — doi:10.1101/565549. [исправить]

Jaitin D. A., Kenigsberg E., Keren-Shaul H., Elefant N., Paul F., Zaretsky I., Mildner A., Cohen N., Jung S., Tanay A., Amit I. Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types. (англ.) // Science (New York, N.Y.). — 2014. — 14 February (vol. 343, no. 6172). — P. 776—779. — doi:10.1126/science.1247651. — PMID 24531970. [исправить]

Patel A. P., Tirosh I., Trombetta J. J., Shalek A. K., Gillespie S. M., Wakimoto H., Cahill D. P., Nahed B. V., Curry W. T., Martuza R. L., Louis D. N., Rozenblatt-Rosen O., Suva M. L., Regev A., Bernstein B. E. Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma (англ.) // Science. — 2014. — 12 June (vol. 344, no. 6190). — P. 1396—1401. — ISSN 0036-8075. — doi:10.1126/science.1254257. [исправить]

Ramsköld D., Luo S., Wang Y. C., Li R., Deng Q., Faridani O. R., Daniels G. A., Khrebtukova I., Loring J. F., Laurent L. C., Schroth G. P., Sandberg R. Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. (англ.) // Nature Biotechnology. — 2012. — August (vol. 30, no. 8). — P. 777—782. — doi:10.1038/nbt.2282. — PMID 22820318. [исправить]

Aceto Nicola, Bardia Aditya, Miyamoto David T., Donaldson Maria C., Wittner Ben S., Spencer Joel A., Yu Min, Pely Adam, Engstrom Amanda, Zhu Huili, Brannigan Brian W., Kapur Ravi, Stott Shannon L., Shioda Toshi, Ramaswamy Sridhar, Ting David T., Lin Charles P., Toner Mehmet, Haber Daniel A., Maheswaran Shyamala. Circulating Tumor Cell Clusters Are Oligoclonal Precursors of Breast Cancer Metastasis (англ.) // Cell. — 2014. — August (vol. 158, no. 5). — P. 1110—1122. — ISSN 0092-8674. — doi:10.1016/j.cell.2014.07.013. [исправить]

Ting D. T., Wittner B. S., Ligorio M., Vincent Jordan N., Shah A. M., Miyamoto D. T., Aceto N., Bersani F., Brannigan B. W., Xega K., Ciciliano J. C., Zhu H., MacKenzie O. C., Trautwein J., Arora K. S., Shahid M., Ellis H. L., Qu N., Bardeesy N., Rivera M. N., Deshpande V., Ferrone C. R., Kapur R., Ramaswamy S., Shioda T., Toner M., Maheswaran S., Haber D. A. Single-cell RNA sequencing identifies extracellular matrix gene expression by pancreatic circulating tumor cells. (англ.) // Cell Reports. — 2014. — 25 September (vol. 8, no. 6). — P. 1905—1918. — doi:10.1016/j.celrep.2014.08.029. — PMID 25242334. [исправить]

Suzuki Ayako, Matsushima Koutatsu, Makinoshima Hideki, Sugano Sumio, Kohno Takashi, Tsuchihara Katsuya, Suzuki Yutaka. Single-cell analysis of lung adenocarcinoma cell lines reveals diverse expression patterns of individual cells invoked by a molecular target drug treatment (англ.) // Genome Biology. — 2015. — 3 April (vol. 16, no. 1). — ISSN 1474-760X. — doi:10.1186/s13059-015-0636-y. [исправить]

Miyamoto D. T., Zheng Y., Wittner B. S., Lee R. J., Zhu H., Broderick K. T., Desai R., Fox D. B., Brannigan B. W., Trautwein J., Arora K. S., Desai N., Dahl D. M., Sequist L. V., Smith M. R., Kapur R., Wu C.-L., Shioda T., Ramaswamy S., Ting D. T., Toner M., Maheswaran S., Haber D. A. RNA-Seq of single prostate CTCs implicates noncanonical Wnt signaling in antiandrogen resistance (англ.) // Science. — 2015. — 17 September (vol. 349, no. 6254). — P. 1351—1356. — ISSN 0036-8075. — doi:10.1126/science.aab0917. [исправить]

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Транскриптомика одиночных клеток (Russian Wikipedia)

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