Enzim katalizi (Turkish Wikipedia)
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archive.org
- Biochemistry. John Wiley & Sons Inc. 2004. ss. 986-989. ISBN 978-0-471-25090-6.
- Biochemistry. John Wiley & Sons Inc. 2004. ss. 604-606. ISBN 978-0-471-25090-6.
- Piccirilli (7 Ocak 1993). "Metal ion catalysis in the Tetrahymena ribozyme reaction". Nature (İngilizce). 361 (6407): 85-88. doi:10.1038/361085a0. PMID 8421499.
caltech.edu
authors.library.caltech.edu
- Marcus (1965). "On the Theory of Electron-Transfer Reactions. VI. Unified Treatment for Homogeneous and Electrode Reactions" (PDF). J. Chem. Phys. 43 (2): 679-701. doi:10.1063/1.1696792. 5 Ağustos 2020 tarihinde kaynağından arşivlendi (PDF). Erişim tarihi: 18 Kasım 2020.
doi.org
doi.org
- Kamerlin (2010). "At the dawn of the 21st century: Is dynamics the missing link for understanding enzyme catalysis?". Proteins: Structure, Function, and Bioinformatics. 78 (6): 1339-75. doi:10.1002/prot.22654. PMC 2841229 $2. PMID 20099310.
- Srinivasan (27 Eylül 2020). "Words of advice: teaching enzyme kinetics". The FEBS Journal. doi:10.1111/febs.15537. ISSN 1742-464X.
- Koshland DE (Şubat 1958). "Application of a Theory of Enzyme Specificity to Protein Synthesis". Proc. Natl. Acad. Sci. U.S.A. 44 (2): 98-104. doi:10.1073/pnas.44.2.98. PMC 335371 $2. PMID 16590179.
- Savir Y (2007). "Conformational Proofreading: The Impact of Conformational Changes on the Specificity of Molecular Recognition" (PDF). PLOS One. 2 (5): e468. doi:10.1371/journal.pone.0000468. PMC 1868595 $2. PMID 17520027. 14 Mayıs 2011 tarihinde kaynağından (PDF) arşivlendi. Erişim tarihi: 22 Ağustos 2010.
- Stanton (1998). "Combined ab initio and Free Energy Calculations To Study Reactions in Enzymes and Solution: Amide Hydrolysis in Trypsin and Aqueous Solution". J. Am. Chem. Soc. 120 (14): 3448-3457. doi:10.1021/ja972723x.
- Kuhn (2000). "QM-FE and Molecular Dynamics Calculations on Catechol O-Methyltransferase: Free Energy of Activation in the Enzyme and in Aqueous Solution and Regioselectivity of the Enzyme-Catalyzed Reaction". J. Am. Chem. Soc. 122 (11): 2586-2596. doi:10.1021/ja992218v.
- Bruice (1999). "Ground State and Transition State Contributions to the Rates of Intramolecular and Enzymatic Reactions". Acc. Chem. Res. 32 (2): 127-136. doi:10.1021/ar960131y.
- Page (1971). "Entropic Contributions to Rate Accelerations in Enzymic and Intramolecular Reactions and the Chelate Effect". Proc. Natl. Acad. Sci. USA. 68 (8): 1678-1683. doi:10.1073/pnas.68.8.1678. PMC 389269 $2. PMID 5288752.
- Warshel (2001). "Dynamics of Biochemical and Biophysical Reactions: Insight from Computer Simulations". Quart. Rev. Biophys. 34 (4): 563-679. doi:10.1017/s0033583501003730. PMID 11852595.
- Warshel (2006). "Electrostatic Basis of Enzyme Catalysis". Chemical Reviews. 106 (8): 3210-3235. doi:10.1021/cr0503106. PMID 16895325.
- Warshel (1989). "How do Serine Proteases Really Work?". Biochemistry. 28 (9): 3629-37. doi:10.1021/bi00435a001. PMID 2665806.
- Marcus (1965). "On the Theory of Electron-Transfer Reactions. VI. Unified Treatment for Homogeneous and Electrode Reactions" (PDF). J. Chem. Phys. 43 (2): 679-701. doi:10.1063/1.1696792. 5 Ağustos 2020 tarihinde kaynağından arşivlendi (PDF). Erişim tarihi: 18 Kasım 2020.
- Warshel (1978). "Energetics of Enzyme Catalysis". Proc. Natl. Acad. Sci. USA. 75 (11): 5250-5254. doi:10.1073/pnas.75.11.5250. PMC 392938 $2. PMID 281676.
- Piccirilli (7 Ocak 1993). "Metal ion catalysis in the Tetrahymena ribozyme reaction". Nature (İngilizce). 361 (6407): 85-88. doi:10.1038/361085a0. PMID 8421499.
- "Metal Ion Catalysis of Nucleophilic Organic Reactions in Solution". Reactions of Coordinated Ligands. Advances in Chemistry. 37. AMERICAN CHEMICAL SOCIETY. 1 Ocak 1962. ss. 19-36. doi:10.1021/ba-1963-0037.ch002. ISBN 978-0841200388.
- Fife (1 Şubat 1985). "Divalent metal ion catalysis in the hydrolysis of esters of picolinic acid. Metal ion promoted hydroxide ion and water catalyzed reactions". Journal of the American Chemical Society. 107 (4): 1041-1047. doi:10.1021/ja00290a048. ISSN 0002-7863.
- Stadtman (1 Ocak 1990). "Metal ion-catalyzed oxidation of proteins: biochemical mechanism and biological consequences". Free Radical Biology & Medicine. 9 (4): 315-325. doi:10.1016/0891-5849(90)90006-5. ISSN 0891-5849. PMID 2283087. 5 Aralık 2020 tarihinde kaynağından arşivlendi. Erişim tarihi: 18 Kasım 2020.
- Warshel (1976). "Theoretical Studies of Enzymatic Reactions: Dielectric Electrostatic and Steric Stabilization of the Carbonium Ion in the Reaction of Lysozyme". Journal of Molecular Biology. 103 (2): 227-49. doi:10.1016/0022-2836(76)90311-9. PMID 985660.
- Garcia-Viloca (2004). "How enzymes work: analysis by modern rate theory and computer simulations". Science. 303 (5655): 186-95. doi:10.1126/science.1088172. PMID 14716003.
- Olsson (2004). "Simulations of the large kinetic isotope effect and the temperature dependence of the hydrogen atom transfer in lipoxygenase". Journal of the American Chemical Society. 126 (9): 2820-8. doi:10.1021/ja037233l. PMID 14995199.
- Masgrau (2006). "Atomic description of an enzyme reaction dominated by proton tunneling". Science. 312 (5771): 237-41. doi:10.1126/science.1126002. PMID 16614214.
- Hwang (1996). "How important are quantum mechanical nuclear motions in enzyme catalysis". J. Am. Chem. Soc. 118 (47): 11745-11751. doi:10.1021/ja962007f.
- Ball (2004). "Enzymes: By chance, or by design?". Nature. 431 (7007): 396-397. doi:10.1038/431396a. PMID 15385982.
- Olsson (2006). "Dynamical Contributions to Enzyme Catalysis: Critical Tests of A Popular Hypothesis". Chem. Rev. 106 (5): 1737-1756. doi:10.1021/cr040427e. PMID 16683752.
- Foigel (2011). "Is the enzyme a powerful reactant of the biochemical reaction?". Molecular and Cellular Biochemistry. 352 (1–2): 87-9. doi:10.1007/s11010-011-0742-4. PMID 21318350.
- Fogel (1982). "Cooperativity of enzymatic reactions and molecular aspects of energy transduction". Mol. Cell. Biochem. 47 (1): 59-64. doi:10.1007/bf00241567. PMID 7132966.
- Hengge (2004). "Role of protein conformational mobility in enzyme catalysis: acylation of alpha-chymotrypsin by specific peptide substrates". Biochemistry. 43 (3): 742-747. doi:10.1021/bi030222k. PMID 14730979.
- Lymn (1971). "Mechanism of adenosine triphosphate hydrolysis by actomyosin". Biochemistry. 10 (25): 4617-4624. doi:10.1021/bi00801a004. PMID 4258719.
- Holmes (2003). "Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide". Nature. 425 (6956): 423-427. doi:10.1038/nature02005. PMID 14508495.
- Siemankowski (1985). "ADP dissociation from actomyosin subfragment 1 is sufficiently slow to limit the unloaded shortening velocity in vertebrate muscle". Proc. Natl. Acad. Sci. USA. 82 (3): 658-662. doi:10.1073/pnas.82.3.658. PMC 397104 $2. PMID 3871943.
- White (1997). "Kinetics of nucleoside triphosphate cleavage and phosphate release steps by associated rabbit skeletal actomyosin, measured using a novel fluorescent probe for phosphate". Biochemistry. 36 (39): 11828-11836. doi:10.1021/bi970540h. PMID 9305974.
- Tirosh (1990). "Translational motion of actin filaments in the presence of heavy meromyosin and MgATP as measured by Doppler broadening of laser light scattering". Biochim. Biophys. Acta. 1037 (3): 274-280. doi:10.1016/0167-4838(90)90025-b. PMID 2178685.
- Tirosh (2006). "Ballistic protons and microwave-induced water solutions (solitons) in bioenergetic transformations". Int. J. Mol. Sci. 7 (9): 320-345. doi:10.3390/i7090320.
- Muddana, Hari S. (28 Ocak 2010). "Substrate Catalysis Enhances Single-Enzyme Diffusion". Journal of the American Chemical Society. 132 (7): 2110-1. doi:10.1021/ja908773a. PMC 2832858 $2. PMID 20108965.
- Riedel, Clement (8 Ocak 2015). "The heat released during catalytic turnover enhances the diffusion of an enzyme". Nature. 517 (7533): 227-30. doi:10.1038/nature14043. PMC 4363105 $2. PMID 25487146. Diğer özet – Nature: News & Views (8 Ocak 2015).
- Rahman (2014). "EC-BLAST: a tool to automatically search and compare enzyme reactions". Nature Methods. 11 (2): 171-174. doi:10.1038/nmeth.2803. PMC 4122987 $2. PMID 24412978.
dx.doi.org
- Srinivasan (27 Eylül 2020). "Words of advice: teaching enzyme kinetics". The FEBS Journal. doi:10.1111/febs.15537. ISSN 1742-464X.
nature.com
- Riedel, Clement (8 Ocak 2015). "The heat released during catalytic turnover enhances the diffusion of an enzyme". Nature. 517 (7533): 227-30. doi:10.1038/nature14043. PMC 4363105 $2. PMID 25487146. Diğer özet – Nature: News & Views (8 Ocak 2015).
nih.gov
ncbi.nlm.nih.gov
- Kamerlin (2010). "At the dawn of the 21st century: Is dynamics the missing link for understanding enzyme catalysis?". Proteins: Structure, Function, and Bioinformatics. 78 (6): 1339-75. doi:10.1002/prot.22654. PMC 2841229 $2. PMID 20099310.
- Koshland DE (Şubat 1958). "Application of a Theory of Enzyme Specificity to Protein Synthesis". Proc. Natl. Acad. Sci. U.S.A. 44 (2): 98-104. doi:10.1073/pnas.44.2.98. PMC 335371 $2. PMID 16590179.
- Savir Y (2007). "Conformational Proofreading: The Impact of Conformational Changes on the Specificity of Molecular Recognition" (PDF). PLOS One. 2 (5): e468. doi:10.1371/journal.pone.0000468. PMC 1868595 $2. PMID 17520027. 14 Mayıs 2011 tarihinde kaynağından (PDF) arşivlendi. Erişim tarihi: 22 Ağustos 2010.
- Page (1971). "Entropic Contributions to Rate Accelerations in Enzymic and Intramolecular Reactions and the Chelate Effect". Proc. Natl. Acad. Sci. USA. 68 (8): 1678-1683. doi:10.1073/pnas.68.8.1678. PMC 389269 $2. PMID 5288752.
- Warshel (2001). "Dynamics of Biochemical and Biophysical Reactions: Insight from Computer Simulations". Quart. Rev. Biophys. 34 (4): 563-679. doi:10.1017/s0033583501003730. PMID 11852595.
- Warshel (2006). "Electrostatic Basis of Enzyme Catalysis". Chemical Reviews. 106 (8): 3210-3235. doi:10.1021/cr0503106. PMID 16895325.
- Warshel (1989). "How do Serine Proteases Really Work?". Biochemistry. 28 (9): 3629-37. doi:10.1021/bi00435a001. PMID 2665806.
- Warshel (1978). "Energetics of Enzyme Catalysis". Proc. Natl. Acad. Sci. USA. 75 (11): 5250-5254. doi:10.1073/pnas.75.11.5250. PMC 392938 $2. PMID 281676.
- Piccirilli (7 Ocak 1993). "Metal ion catalysis in the Tetrahymena ribozyme reaction". Nature (İngilizce). 361 (6407): 85-88. doi:10.1038/361085a0. PMID 8421499.
- Stadtman (1 Ocak 1990). "Metal ion-catalyzed oxidation of proteins: biochemical mechanism and biological consequences". Free Radical Biology & Medicine. 9 (4): 315-325. doi:10.1016/0891-5849(90)90006-5. ISSN 0891-5849. PMID 2283087. 5 Aralık 2020 tarihinde kaynağından arşivlendi. Erişim tarihi: 18 Kasım 2020.
- Warshel (1976). "Theoretical Studies of Enzymatic Reactions: Dielectric Electrostatic and Steric Stabilization of the Carbonium Ion in the Reaction of Lysozyme". Journal of Molecular Biology. 103 (2): 227-49. doi:10.1016/0022-2836(76)90311-9. PMID 985660.
- Garcia-Viloca (2004). "How enzymes work: analysis by modern rate theory and computer simulations". Science. 303 (5655): 186-95. doi:10.1126/science.1088172. PMID 14716003.
- Olsson (2004). "Simulations of the large kinetic isotope effect and the temperature dependence of the hydrogen atom transfer in lipoxygenase". Journal of the American Chemical Society. 126 (9): 2820-8. doi:10.1021/ja037233l. PMID 14995199.
- Masgrau (2006). "Atomic description of an enzyme reaction dominated by proton tunneling". Science. 312 (5771): 237-41. doi:10.1126/science.1126002. PMID 16614214.
- Ball (2004). "Enzymes: By chance, or by design?". Nature. 431 (7007): 396-397. doi:10.1038/431396a. PMID 15385982.
- Olsson (2006). "Dynamical Contributions to Enzyme Catalysis: Critical Tests of A Popular Hypothesis". Chem. Rev. 106 (5): 1737-1756. doi:10.1021/cr040427e. PMID 16683752.
- Foigel (2011). "Is the enzyme a powerful reactant of the biochemical reaction?". Molecular and Cellular Biochemistry. 352 (1–2): 87-9. doi:10.1007/s11010-011-0742-4. PMID 21318350.
- Fogel (1982). "Cooperativity of enzymatic reactions and molecular aspects of energy transduction". Mol. Cell. Biochem. 47 (1): 59-64. doi:10.1007/bf00241567. PMID 7132966.
- Hengge (2004). "Role of protein conformational mobility in enzyme catalysis: acylation of alpha-chymotrypsin by specific peptide substrates". Biochemistry. 43 (3): 742-747. doi:10.1021/bi030222k. PMID 14730979.
- Lymn (1971). "Mechanism of adenosine triphosphate hydrolysis by actomyosin". Biochemistry. 10 (25): 4617-4624. doi:10.1021/bi00801a004. PMID 4258719.
- Holmes (2003). "Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide". Nature. 425 (6956): 423-427. doi:10.1038/nature02005. PMID 14508495.
- Siemankowski (1985). "ADP dissociation from actomyosin subfragment 1 is sufficiently slow to limit the unloaded shortening velocity in vertebrate muscle". Proc. Natl. Acad. Sci. USA. 82 (3): 658-662. doi:10.1073/pnas.82.3.658. PMC 397104 $2. PMID 3871943.
- White (1997). "Kinetics of nucleoside triphosphate cleavage and phosphate release steps by associated rabbit skeletal actomyosin, measured using a novel fluorescent probe for phosphate". Biochemistry. 36 (39): 11828-11836. doi:10.1021/bi970540h. PMID 9305974.
- Tirosh (1990). "Translational motion of actin filaments in the presence of heavy meromyosin and MgATP as measured by Doppler broadening of laser light scattering". Biochim. Biophys. Acta. 1037 (3): 274-280. doi:10.1016/0167-4838(90)90025-b. PMID 2178685.
- Muddana, Hari S. (28 Ocak 2010). "Substrate Catalysis Enhances Single-Enzyme Diffusion". Journal of the American Chemical Society. 132 (7): 2110-1. doi:10.1021/ja908773a. PMC 2832858 $2. PMID 20108965.
- Riedel, Clement (8 Ocak 2015). "The heat released during catalytic turnover enhances the diffusion of an enzyme". Nature. 517 (7533): 227-30. doi:10.1038/nature14043. PMC 4363105 $2. PMID 25487146. Diğer özet – Nature: News & Views (8 Ocak 2015).
- Rahman (2014). "EC-BLAST: a tool to automatically search and compare enzyme reactions". Nature Methods. 11 (2): 171-174. doi:10.1038/nmeth.2803. PMC 4122987 $2. PMID 24412978.
oregonstate.edu
lpi.oregonstate.edu
- "Micronutrient Information Center, Oregon State University". 21 Mart 2015 tarihinde kaynağından arşivlendi. Erişim tarihi: 18 Kasım 2020.
science20.com
- ""How Enzymes Work"". 5 Ağustos 2020 tarihinde kaynağından arşivlendi. Erişim tarihi: 18 Kasım 2020.
web.archive.org
- Savir Y (2007). "Conformational Proofreading: The Impact of Conformational Changes on the Specificity of Molecular Recognition" (PDF). PLOS One. 2 (5): e468. doi:10.1371/journal.pone.0000468. PMC 1868595 $2. PMID 17520027. 14 Mayıs 2011 tarihinde kaynağından (PDF) arşivlendi. Erişim tarihi: 22 Ağustos 2010.
- Marcus (1965). "On the Theory of Electron-Transfer Reactions. VI. Unified Treatment for Homogeneous and Electrode Reactions" (PDF). J. Chem. Phys. 43 (2): 679-701. doi:10.1063/1.1696792. 5 Ağustos 2020 tarihinde kaynağından arşivlendi (PDF). Erişim tarihi: 18 Kasım 2020.
- ""How Enzymes Work"". 5 Ağustos 2020 tarihinde kaynağından arşivlendi. Erişim tarihi: 18 Kasım 2020.
- "Micronutrient Information Center, Oregon State University". 21 Mart 2015 tarihinde kaynağından arşivlendi. Erişim tarihi: 18 Kasım 2020.
- Stadtman (1 Ocak 1990). "Metal ion-catalyzed oxidation of proteins: biochemical mechanism and biological consequences". Free Radical Biology & Medicine. 9 (4): 315-325. doi:10.1016/0891-5849(90)90006-5. ISSN 0891-5849. PMID 2283087. 5 Aralık 2020 tarihinde kaynağından arşivlendi. Erişim tarihi: 18 Kasım 2020.
weizmann.ac.il
- Savir Y (2007). "Conformational Proofreading: The Impact of Conformational Changes on the Specificity of Molecular Recognition" (PDF). PLOS One. 2 (5): e468. doi:10.1371/journal.pone.0000468. PMC 1868595 $2. PMID 17520027. 14 Mayıs 2011 tarihinde kaynağından (PDF) arşivlendi. Erişim tarihi: 22 Ağustos 2010.
worldcat.org
- Srinivasan (27 Eylül 2020). "Words of advice: teaching enzyme kinetics". The FEBS Journal. doi:10.1111/febs.15537. ISSN 1742-464X.
- Biochemistry. John Wiley & Sons. 2011. OCLC 808679090.
- Fife (1 Şubat 1985). "Divalent metal ion catalysis in the hydrolysis of esters of picolinic acid. Metal ion promoted hydroxide ion and water catalyzed reactions". Journal of the American Chemical Society. 107 (4): 1041-1047. doi:10.1021/ja00290a048. ISSN 0002-7863.
- Stadtman (1 Ocak 1990). "Metal ion-catalyzed oxidation of proteins: biochemical mechanism and biological consequences". Free Radical Biology & Medicine. 9 (4): 315-325. doi:10.1016/0891-5849(90)90006-5. ISSN 0891-5849. PMID 2283087. 5 Aralık 2020 tarihinde kaynağından arşivlendi. Erişim tarihi: 18 Kasım 2020.
zenodo.org
- Stadtman (1 Ocak 1990). "Metal ion-catalyzed oxidation of proteins: biochemical mechanism and biological consequences". Free Radical Biology & Medicine. 9 (4): 315-325. doi:10.1016/0891-5849(90)90006-5. ISSN 0891-5849. PMID 2283087. 5 Aralık 2020 tarihinde kaynağından arşivlendi. Erişim tarihi: 18 Kasım 2020.