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Bioconductor (Ukrainian Wikipedia)

Analysis of information sources in references of the Wikipedia article "Bioconductor" in Ukrainian language version.

Last modified:

Ref.Un. Ref.Website
Global rank Ukrainian rank
2014nih.gov
5th place
5th place
66bioconductor.org
low place
low place
43doi.org
2nd place
3rd place
11cutadapt.readthedocs.io
low place
low place
11ggplot2-book.org
low place
low place
11rdrr.io
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low place

bioconductor.org (Global: low place; Ukrainian: low place)

cutadapt.readthedocs.io (Global: low place; Ukrainian: low place)

doi.org (Global: 2nd place; Ukrainian: 3rd place)

  • Steffen Durinck, Yves Moreau, Arek Kasprzyk, Sean Davis, Bart De Moor, Alvis Brazma, Wolfgang Huber, BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis, Bioinformatics, Volume 21, Issue 16, August 2005, Pages 3439–3440, https://doi.org/10.1093/bioinformatics/bti525
  • Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth, edgeR: a Bioconductor package for differential expression analysis of digital gene expression data, Bioinformatics, Volume 26, Issue 1, January 2010, Pages 139–140, https://doi.org/10.1093/bioinformatics/btp616
  • Xu, T., Su, N., Liu, L. et al. miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase. BMC Bioinformatics 19 (Suppl 19), 514 (2018). https://doi.org/10.1186/s12859-018-2531-5

ggplot2-book.org (Global: low place; Ukrainian: low place)

nih.gov (Global: 5th place; Ukrainian: 5th place)

ncbi.nlm.nih.gov

  • Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014;15(12):550. doi: 10.1186/s13059-014-0550-8. PMID 25516281; PMCID: PMC4302049.
  • Law CW, Alhamdoosh M, Su S, Dong X, Tian L, Smyth GK, Ritchie ME. RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR. F1000Res. 2016 Jun 17;5:ISCB Comm J-1408. doi: 10.12688/f1000research.9005.3. PMID 27441086; PMCID: PMC4937821
  • Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, Smyth GK. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015 Apr 20;43(7):e47. doi: 10.1093/nar/gkv007. Epub 2015 Jan 20. PMID 25605792; PMCID: PMC4402510.
  • Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. PMID 25633503; PMCID: PMC4509590.
  • Liao Y, Smyth GK, Shi W. The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads. Nucleic Acids Res. 2019 May 7;47(8):e47. doi: 10.1093/nar/gkz114. PMID 30783653; PMCID: PMC6486549.
  • Morgan M, Anders S, Lawrence M, Aboyoun P, Pagès H, Gentleman R. ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinformatics. 2009 Oct 1;25(19):2607-8. doi: 10.1093/bioinformatics/btp450. Epub 2009 Aug 3. PMID 19654119; PMCID: PMC2752612.
  • Liao Y, Smyth GK, Shi W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics. 2014 Apr 1;30(7):923-30. doi: 10.1093/bioinformatics/btt656. Epub 2013 Nov 13. PMID 24227677.
  • Koch CM, Chiu SF, Akbarpour M, Bharat A, Ridge KM, Bartom ET, Winter DR. A Beginner's Guide to Analysis of RNA Sequencing Data. Am J Respir Cell Mol Biol. 2018 Aug;59(2):145-157. doi: 10.1165/rcmb.2017-0430TR. PMID 29624415; PMCID: PMC6096346.
  • Chen Y, Lun AT, Smyth GK. From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline. F1000Res. 2016 Jun 20;5:1438. doi: 10.12688/f1000research.8987.2. PMID 27508061; PMCID: PMC4934518.
  • Chen Y, Lun AT, Smyth GK. From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline. F1000Res. 2016 Jun 20;5:1438. doi: 10.12688/f1000research.8987.2. PMID 27508061; PMCID: PMC4934518
  • Law CW, Alhamdoosh M, Su S, Dong X, Tian L, Smyth GK, Ritchie ME. RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR. F1000Res. 2016 Jun 17;5:ISCB Comm J-1408. doi: 10.12688/f1000research.9005.3. PMID 27441086; PMCID: PMC4937821.
  • Liao Y, Smyth GK, Shi W. The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote. Nucleic Acids Res. 2013 May 1;41(10):e108. doi: 10.1093/nar/gkt214. Epub 2013 Apr 4. PMID 23558742; PMCID: PMC3664803.
  • Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res. 2010 Apr;38(6):1767-71. doi: 10.1093/nar/gkp1137. Epub 2009 Dec 16. PMID 20015970; PMCID: PMC2847217.
  • Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1. PMID 24695404; PMCID: PMC4103590.

rdrr.io (Global: low place; Ukrainian: low place)