Rosetta@home (Chinese Wikipedia)

Analysis of information sources in references of the Wikipedia article "Rosetta@home" in Chinese language version.

Last modified: 09:22:02, 18 July 2026 (UTC)

Ref.Un. Ref.Website

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8572web.archive.org

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adsabs.harvard.edu (Global: 14^th place; Chinese: 27^th place)

ui.adsabs.harvard.edu

Baek, Minkyung; DiMaio, Frank; Anishchenko, Ivan; Dauparas, Justas; Ovchinnikov, Sergey; Lee, Gyu Rie; Wang, Jue; Cong, Qian; Kinch, Lisa N.; Schaeffer, R. Dustin; Millán, Claudia; Park, Hahnbeom; Adams, Carson; Glassman, Caleb R.; DeGiovanni, Andy; Pereira, Jose H.; Rodrigues, Andria V.; van Dijk, Alberdina A.; Ebrecht, Ana C.; Opperman, Diederik J.; Sagmeister, Theo; Buhlheller, Christoph; Pavkov-Keller, Tea; Rathinaswamy, Manoj K.; Dalwadi, Udit; Yip, Calvin K.; Burke, John E.; Garcia, K. Christopher; Grishin, Nick V.; Adams, Paul D.; Read, Randy J.; Baker, David. Accurate prediction of protein structures and interactions using a three-track neural network. Science. 20 August 2021, 373 (6557): 871–876. Bibcode:2021Sci...373..871B. PMC 7612213 . PMID 34282049. doi:10.1126/science.abj8754.

archive.org (Global: 6^th place; Chinese: 2^nd place)

（英文）Bourne PE, Helge W (编). Structural Bioinformatics. Hoboken, NJ: Wiley-Liss. 2003. ISBN 978-0471201991. OCLC 50199108.
Baek, Minkyung; DiMaio, Frank; Anishchenko, Ivan; Dauparas, Justas; Ovchinnikov, Sergey; Lee, Gyu Rie; Wang, Jue; Cong, Qian; Kinch, Lisa N.; Schaeffer, R. Dustin; Millán, Claudia; Park, Hahnbeom; Adams, Carson; Glassman, Caleb R.; DeGiovanni, Andy; Pereira, Jose H.; Rodrigues, Andria V.; van Dijk, Alberdina A.; Ebrecht, Ana C.; Opperman, Diederik J.; Sagmeister, Theo; Buhlheller, Christoph; Pavkov-Keller, Tea; Rathinaswamy, Manoj K.; Dalwadi, Udit; Yip, Calvin K.; Burke, John E.; Garcia, K. Christopher; Grishin, Nick V.; Adams, Paul D.; Read, Randy J.; Baker, David. Accurate prediction of protein structures and interactions using a three-track neural network. Science. 20 August 2021, 373 (6557): 871–876. Bibcode:2021Sci...373..871B. PMC 7612213 . PMID 34282049. doi:10.1126/science.abj8754.

asm.org (Global: 3,567^th place; Chinese: 1,852^nd place)

journals.asm.org

Albrecht, Mark T.; Li, Han; Williamson, E. Diane; LeButt, Chris S.; Flick-Smith, Helen C.; Quinn, Conrad P.; Westra, Hans; Galloway, Darrell; Mateczun, Alfred. Human Monoclonal Antibodies against Anthrax Lethal Factor and Protective Antigen Act Independently To Protect against Bacillus anthracis Infection and Enhance Endogenous Immunity to Anthrax. Infection and Immunity. 2007-11, 75 (11): 5425–5433 [2022-05-01]. ISSN 0019-9567. PMC 2168292 . PMID 17646360. doi:10.1128/IAI.00261-07. （原始内容存档于2021-08-07）（英语）.

bakerlab.org (Global: low place; Chinese: low place)

boinc.bakerlab.org

Rosetta@home是什么？. 华盛顿大学. [2009年1月8日]. （原始内容存档于2008年9月13日）（中文）.
Recommended System Requirements. Rosetta@home. 华盛顿大学. 2008年12月10日 [2009年1月8日]. （原始内容存档于2008年9月25日）（英语）.
Rosetta@Home FAQ (work in progress) (message 10910). Rosetta@home forums. 华盛顿大学. 2006年2月18日 [2009年1月8日]. （原始内容存档于2009年2月26日）（英语）.
David E K. Random Seed (message 3155). Rosetta@home forums. 华盛顿大学. 2005年11月14日 [2009年1月8日]. （原始内容存档于2009年2月26日）（英语）.
Rosetta及其图像的快速向导. Rosetta@home. 华盛顿大学. 2007年11月10日 [2009年1月8日]. （原始内容存档于2008年9月24日）（中文）.
David E K. Problems with minirosetta version 1.+ (Message 51199). Rosetta@home forums. 华盛顿大学. 2008年2月6日 [2009年1月8日]. （原始内容存档于2009年2月26日）（英语）.
David Baker. David Baker's Rosetta@home journal (message 55893). 华盛顿大学. 2008年9月20日 [2009年1月8日]. （原始内容存档于2008年6月23日）（英语）.
研究概况. Rosetta@home. 华盛顿大学. 2007年11月10日 [2009年1月9日]. （原始内容存档于2008年9月25日）（中文）.
相关疾病研究. Rosetta@home. 华盛顿大学. 2007年11月10日 [2009年1月9日]. （原始内容存档于2008年9月23日）（中文）.
David Baker. David Baker's Rosetta@home journal. 华盛顿大学. [2009年1月9日]. （原始内容存档于2008年9月25日）（英语）.
amyloid fibril structure prediction. Rosetta@home forums. 华盛顿大学. [2009年1月9日]. （原始内容存档于2009年2月26日）（英语）.
David Baker. Publications on R@H's Alzheimer's work? (message 54681). Rosetta@home forums. 华盛顿大学. [2009年1月9日]. （原始内容存档于2009年2月26日）（英语）.
David Baker. Dr. Baker's journal archive (read only) (message 40756). 华盛顿大学. [2009年1月9日]. （原始内容存档于2009年2月26日）（英语）.
News archive. Rosetta@home. 华盛顿大学. [2009年1月9日]. （原始内容存档于2016年6月16日）（英语）.
Chu Wang. protein-protein docking at Rosetta@Home. 华盛顿大学. [2008年9月7日]. （原始内容存档于2008年6月23日）（英语）.
David Baker. David Baker's Rosetta@home journal (message 52902). 华盛顿大学. 2008年5月7日 [2009年1月9日]. （原始内容存档于2008年6月23日）（英语）.
David Baker. David Baker's Rosetta@home journal (message 52963). 华盛顿大学. 2008年5月10日 [2009年1月9日]. （原始内容存档于2008年6月23日）（英语）.
The new credit system explained. 华盛顿大学. 2006年8月24日 [2009年1月9日]. （原始内容存档于2009年2月2日）（英语）.
Predictor of the day archive. Rosetta@home. 华盛顿大学. [2009年1月9日]. （原始内容存档于2008年9月24日）（英语）.
Rosetta@home. 华盛顿大学. [2009年1月9日]. （原始内容存档于2016年1月3日）（中文）.

robetta.bakerlab.org

Robetta: full-chain protein structure prediction server. 华盛顿大学. [2009年1月9日]. （原始内容存档于2008年9月25日）（英语）.

ralph.bakerlab.org

RALPH@home. 华盛顿大学. [2009年1月9日]. （原始内容存档于2016年1月13日）（英语）.

berkeley.edu (Global: 621^st place; Chinese: 677^th place)

boinc.berkeley.edu

Download BOINC client software. BOINC. 加利福尼亚大学伯克利分校. 2008年12月16日 [2009年1月8日]. （原始内容存档于2008年12月7日）（英语）.
Project list - BOINC. 加利福尼亚大学伯克利分校. [2009年1月8日]. （原始内容存档于2008年9月8日）（英语）.

boincstats.com (Global: low place; Chinese: low place)

Rosetta@home - Credit overview. boincstats.com. [2015年2月12日]. （原始内容存档于2011年10月7日）（英语）.
Project credit comparison. boincstats.com. [2009年1月9日]. （原始内容存档于2008年9月13日）（英语）.
Credit divided over projects. boincstats.com. [2010年11月23日]. （原始内容存档于2009年3月26日）（英语）.

doi.org (Global: 2^nd place; Chinese: 5^th place)

Lensink, Marc F.; Méndez, Raúl; Wodak, Shoshana J. Docking and scoring protein complexes: CAPRI 3rd Edition. Proteins: Structure, Function, and Bioinformatics. 2007-10-05, 69 (4): 704–718 [2022-05-01]. PMID 17918726. doi:10.1002/prot.21804. （原始内容存档于2022-05-01）（英语）.
Kopp, Jürgen; Bordoli, Lorenza; Battey, James N.D.; Kiefer, Florian; Schwede, Torsten. Assessment of CASP7 predictions for template-based modeling targets. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 38–56 [2022-05-01]. PMID 17894352. doi:10.1002/prot.21753. （原始内容存档于2022-05-01）（英语）.
Read, Randy J.; Chavali, Gayatri. Assessment of CASP7 predictions in the high accuracy template-based modeling category. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 27–37 [2022-05-01]. PMID 17894351. doi:10.1002/prot.21662. （原始内容存档于2022-05-01）（英语）.
Jauch, Ralf; Yeo, Hock Chuan; Kolatkar, Prasanna R.; Clarke, Neil D. Assessment of CASP7 structure predictions for template free targets. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 57–67 [2022-05-01]. PMID 17894330. doi:10.1002/prot.21771. （原始内容存档于2022-05-01）（英语）.
Das, Rhiju; Qian, Bin; Raman, Srivatsan; Vernon, Robert; Thompson, James; Bradley, Philip; Khare, Sagar; Tyka, Michael D.; Bhat, Divya. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 118–128 [2022-05-01]. PMID 17894356. doi:10.1002/prot.21636. （原始内容存档于2022-05-01）（英语）.
Wang, Chu; Schueler-Furman, Ora; Andre, Ingemar; London, Nir; Fleishman, Sarel J.; Bradley, Philip; Qian, Bin; Baker, David. RosettaDock in CAPRI rounds 6-12. Proteins: Structure, Function, and Bioinformatics. 2007-08-01, 69 (4): 758–763 [2022-05-01]. PMID 17671979. doi:10.1002/prot.21684. （原始内容存档于2022-05-01）（英语）.
Jiang, Lin; Althoff, Eric A.; Clemente, Fernando R.; Doyle, Lindsey; Röthlisberger, Daniela; Zanghellini, Alexandre; Gallaher, Jasmine L.; Betker, Jamie L.; Tanaka, Fujie. De Novo Computational Design of Retro-Aldol Enzymes. Science. 2008-03-07, 319 (5868): 1387–1391 [2022-05-01]. ISSN 0036-8075. PMC 3431203 . PMID 18323453. doi:10.1126/science.1152692. （原始内容存档于2022-02-25）（英语）.
Check Hayden, Erika. Protein prize up for grabs after retraction. Nature. 2008-02-13: news.2008.569 [2022-05-01]. ISSN 0028-0836. doi:10.1038/news.2008.569. （原始内容存档于2021-08-06）（英语）.
Kuhlman, Brian; Baker, David. Native protein sequences are close to optimal for their structures. Proceedings of the National Academy of Sciences. 2000-09-12, 97 (19): 10383–10388 [2022-05-01]. ISSN 0027-8424. PMC 27033 . PMID 10984534. doi:10.1073/pnas.97.19.10383. （原始内容存档于2022-05-01）（英语）.
Thompson, Michael J.; Sievers, Stuart A.; Karanicolas, John; Ivanova, Magdalena I.; Baker, David; Eisenberg, David. The 3D profile method for identifying fibril-forming segments of proteins. Proceedings of the National Academy of Sciences. 2006-03-14, 103 (11): 4074–4078 [2022-05-01]. ISSN 0027-8424. PMC 1449648 . PMID 16537487. doi:10.1073/pnas.0511295103. （原始内容存档于2022-05-01）（英语）.
Wang, Chu; Schueler-Furman, Ora; Baker, David. Improved side-chain modeling for protein-protein docking. Protein Science. 2005-05, 14 (5): 1328–1339. PMC 2253276 . PMID 15802647. doi:10.1110/ps.041222905 （英语）.
Gray, Jeffrey J.; Moughon, Stewart; Wang, Chu; Schueler-Furman, Ora; Kuhlman, Brian; Rohl, Carol A.; Baker, David. Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations. Journal of Molecular Biology. 2003-08, 331 (1): 281–299 [2022-05-01]. PMID 12875852. doi:10.1016/S0022-2836(03)00670-3. （原始内容存档于2022-03-27）（英语）.
Schueler-Furman, Ora; Wang, Chu; Baker, David. Progress in protein-protein docking: Atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility. Proteins: Structure, Function, and Bioinformatics. 2005-06-24, 60 (2): 187–194 [2022-05-01]. PMID 15981249. doi:10.1002/prot.20556. （原始内容存档于2022-05-01）（英语）.
Lacy, D. Borden; Lin, Henry C.; Melnyk, Roman A.; Schueler-Furman, Ora; Reither, Laura; Cunningham, Kristina; Baker, David; Collier, R. John. A model of anthrax toxin lethal factor bound to protective antigen. Proceedings of the National Academy of Sciences. 2005-11-08, 102 (45): 16409–16414 [2022-05-01]. ISSN 0027-8424. PMC 1283467 . PMID 16251269. doi:10.1073/pnas.0508259102. （原始内容存档于2022-05-02）（英语）.
Albrecht, Mark T.; Li, Han; Williamson, E. Diane; LeButt, Chris S.; Flick-Smith, Helen C.; Quinn, Conrad P.; Westra, Hans; Galloway, Darrell; Mateczun, Alfred. Human Monoclonal Antibodies against Anthrax Lethal Factor and Protective Antigen Act Independently To Protect against Bacillus anthracis Infection and Enhance Endogenous Immunity to Anthrax. Infection and Immunity. 2007-11, 75 (11): 5425–5433 [2022-05-01]. ISSN 0019-9567. PMC 2168292 . PMID 17646360. doi:10.1128/IAI.00261-07. （原始内容存档于2021-08-07）（英语）.
Sprague, Elizabeth R; Wang, Chu; Baker, David; Bjorkman, Pamela J. Virgin, Skip , 编. Crystal Structure of the HSV-1 Fc Receptor Bound to Fc Reveals a Mechanism for Antibody Bipolar Bridging. PLoS Biology. 2006-05-02, 4 (6): e148. ISSN 1545-7885. PMC 1450327 . PMID 16646632. doi:10.1371/journal.pbio.0040148 （英语）.
Windbichler, N.; Papathanos, P. A.; Catteruccia, F.; Ranson, H.; Burt, A.; Crisanti, A. Homing endonuclease mediated gene targeting in Anopheles gambiae cells and embryos. Nucleic Acids Research. 2007-08-23, 35 (17): 5922–5933 [2022-05-01]. ISSN 0305-1048. PMC 2034484 . PMID 17726053. doi:10.1093/nar/gkm632. （原始内容存档于2017-07-28）（英语）.
Ashworth, Justin; Havranek, James J.; Duarte, Carlos M.; Sussman, Django; Monnat, Raymond J.; Stoddard, Barry L.; Baker, David. Computational redesign of endonuclease DNA binding and cleavage specificity. Nature. 2006-06, 441 (7093): 656–659 [2022-05-01]. ISSN 0028-0836. PMC 2999987 . PMID 16738662. doi:10.1038/nature04818. （原始内容存档于2022-05-01）（英语）.
Simons, K. T.; Bonneau, R.; Ruczinski, I.; Baker, D. Ab initio protein structure prediction of CASP III targets using ROSETTA. Proteins. 1999,. Suppl 3: 171–176 [2022-05-01]. ISSN 0887-3585. PMID 10526365. doi:10.1002/(sici)1097-0134(1999)37:3+<171::aid-prot21>3.3.co;2-q. （原始内容存档于2022-05-01）.
Nauli, Sehat; Kuhlman, Brian; Baker, David. Computer-based redesign of a protein folding pathway. Nature Structural Biology. 2001-07-01, 8 (7): 602–605 [2022-05-01]. PMID 11427890. doi:10.1038/89638. （原始内容存档于2016-06-03）.
Kuhlman, Brian; Dantas, Gautam; Ireton, Gregory C.; Varani, Gabriele; Stoddard, Barry L.; Baker, David. Design of a Novel Globular Protein Fold with Atomic-Level Accuracy. Science. 2003-11-21, 302 (5649): 1364–1368 [2022-05-01]. ISSN 0036-8075. PMID 14631033. doi:10.1126/science.1089427. （原始内容存档于2022-05-01）（英语）.
Gray, Jeffrey J.; Moughon, Stewart E.; Kortemme, Tanja; Schueler-Furman, Ora; Misura, Kira M.S.; Morozov, Alexandre V.; Baker, David. Protein-protein docking predictions for the CAPRI experiment. Proteins: Structure, Function, and Genetics. 2003-07-01, 52 (1): 118–122 [2022-05-01]. ISSN 0887-3585. PMID 12784377. doi:10.1002/prot.10384. （原始内容存档于2022-05-01）（英语）.
Daily, Michael D.; Masica, David; Sivasubramanian, Arvind; Somarouthu, Sony; Gray, Jeffrey J. CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock. Proteins: Structure, Function, and Bioinformatics. 2005-06-24, 60 (2): 181–186 [2022-05-01]. PMID 15981262. doi:10.1002/prot.20555. （原始内容存档于2022-05-01）（英语）.
Méndez, Raúl; Leplae, Raphaël; Lensink, Marc F.; Wodak, Shoshana J. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures. Proteins: Structure, Function, and Bioinformatics. 2005-06-24, 60 (2): 150–169 [2022-05-01]. PMID 15981261. doi:10.1002/prot.20551. （原始内容存档于2022-05-01）（英语）.
Aloy, Patrick; Stark, Alexander; Hadley, Caroline; Russell, Robert B. Predictions without templates: New folds, secondary structure, and contacts in CASP5. Proteins: Structure, Function, and Genetics. 2003, 53 (S6): 436–456 [2022-05-01]. ISSN 0887-3585. PMID 14579333. doi:10.1002/prot.10546. （原始内容存档于2022-05-01）（英语）.
Tress, Michael; Ezkurdia, Iakes; Graña, Osvaldo; López, Gonzalo; Valencia, Alfonso. Assessment of predictions submitted for the CASP6 comparative modeling category. Proteins: Structure, Function, and Bioinformatics. 2005, 61 (S7): 27–45 [2022-05-01]. ISSN 0887-3585. PMID 16187345. doi:10.1002/prot.20720. （原始内容存档于2022-05-01）（英语）.
Battey, James N. D.; Kopp, Jürgen; Bordoli, Lorenza; Read, Randy J.; Clarke, Neil D.; Schwede, Torsten. Automated server predictions in CASP7. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 68–82 [2022-05-01]. PMID 17894354. doi:10.1002/prot.21761. （原始内容存档于2022-05-01）（英语）.
Chivian, Dylan; Kim, David E.; Malmström, Lars; Schonbrun, Jack; Rohl, Carol A.; Baker, David. Prediction of CASP6 structures using automated robetta protocols. Proteins: Structure, Function, and Bioinformatics. 2005, 61 (S7): 157–166 [2022-05-01]. ISSN 0887-3585. PMID 16187358. doi:10.1002/prot.20733. （原始内容存档于2022-05-01）（英语）.
Baek, Minkyung; DiMaio, Frank; Anishchenko, Ivan; Dauparas, Justas; Ovchinnikov, Sergey; Lee, Gyu Rie; Wang, Jue; Cong, Qian; Kinch, Lisa N.; Schaeffer, R. Dustin; Millán, Claudia; Park, Hahnbeom; Adams, Carson; Glassman, Caleb R.; DeGiovanni, Andy; Pereira, Jose H.; Rodrigues, Andria V.; van Dijk, Alberdina A.; Ebrecht, Ana C.; Opperman, Diederik J.; Sagmeister, Theo; Buhlheller, Christoph; Pavkov-Keller, Tea; Rathinaswamy, Manoj K.; Dalwadi, Udit; Yip, Calvin K.; Burke, John E.; Garcia, K. Christopher; Grishin, Nick V.; Adams, Paul D.; Read, Randy J.; Baker, David. Accurate prediction of protein structures and interactions using a three-track neural network. Science. 20 August 2021, 373 (6557): 871–876. Bibcode:2021Sci...373..871B. PMC 7612213 . PMID 34282049. doi:10.1126/science.abj8754.
Peng, Z; Wang, W; Han, R; Zhang, F; Yang, J. Protein structure prediction in the deep learning era.. Current Opinion in Structural Biology. December 2022, 77: 102495. PMID 36371845. S2CID 253470306. doi:10.1016/j.sbi.2022.102495.
Du, Zongyang; Su, Hong; Wang, Wenkai; Ye, Lisha; Wei, Hong; Peng, Zhenling; Anishchenko, Ivan; Baker, David; Yang, Jianyi. The trRosetta server for fast and accurate protein structure prediction. Nature Protocols. December 2021, 16 (12): 5634–5651. PMID 34759384. S2CID 243987300. doi:10.1038/s41596-021-00628-9 .
Malmström, Lars; Riffle, Michael; Strauss, Charlie E. M; Chivian, Dylan; Davis, Trisha N; Bonneau, Richard; Baker, David. Sali, Andrej , 编. Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology. PLoS Biology. 2007-03-20, 5 (4): e76. ISSN 1545-7885. PMC 1828141 . PMID 17373854. doi:10.1371/journal.pbio.0050076 （英语）.
Das, Rhiju; Qian, Bin; Raman, Srivatsan; Vernon, Robert; Thompson, James; Bradley, Philip; Khare, Sagar; Tyka, Michael D.; Bhat, Divya. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 118–128 [2022-05-01]. doi:10.1002/prot.21636. （原始内容存档于2022-05-01）（英语）.

elsevier.com (Global: 365^th place; Chinese: 262^nd place)

linkinghub.elsevier.com

Gray, Jeffrey J.; Moughon, Stewart; Wang, Chu; Schueler-Furman, Ora; Kuhlman, Brian; Rohl, Carol A.; Baker, David. Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations. Journal of Molecular Biology. 2003-08, 331 (1): 281–299 [2022-05-01]. PMID 12875852. doi:10.1016/S0022-2836(03)00670-3. （原始内容存档于2022-03-27）（英语）.

fold.it (Global: low place; Chinese: low place)

Players. Foldit. [2009年1月9日]. （原始内容存档于2015年2月14日）（英语）.
Frequently Asked Questions. Foldit. [2009年1月9日]. （原始内容存档于2008年9月14日）（英语）.

gcgh.org (Global: low place; Chinese: low place)

Dr. Austin Burt. Homing Endonuclease Genes: New Tools for Mosquito Population Engineering and Control. Grand Challenges in Global Health. [2009年1月9日]. （原始内容存档于2008年7月6日）（英语）.

hivvaccineenterprise.org (Global: low place; Chinese: low place)

Liu Y; et al. Development of IgG1 b12 scaffolds and HIV-1 env-based outer domain immunogens capable of eliciting and detecting IgG1 b12-like antibodies (PDF). Global HIV Vaccine Enterprise. 2007 [2008年9月28日]. （原始内容 (PDF)存档于2009年2月25日）（英语）.

hpcwire.com (Global: low place; Chinese: low place)

Rosetta@home Rallies a Legion of Computers Against the Coronavirus. HPCwire. 2020-03-24 [2022-05-01]. （原始内容存档于2020-04-09）（美国英语）.

line.me (Global: 4,722^nd place; Chinese: 1,111^th place)

today.line.me

Zoey. 玩遊戲可以破解病毒？蛋白質摺疊遊戲 Foldit 新增 COVID-19 謎題，全球玩家都能提供幫助！. LINE. 2020-03-20 [2020-04-11]. （原始内容存档于2020-04-11）（中文（臺灣））. 來自華盛頓大學的蛋白質摺疊遊戲 Foldit 由電腦科學和工程學系與生物化學學系共同開發，2008 年推出初始版本，透過遊戲的方式讓任何人都可以參與蛋白質結構預測，利用人腦的 3D 圖像視覺能力、非專業領域玩家的直覺思考模式，改善現有蛋白質摺疊軟體的演算法，甚至提供具有可能性的方案，實現分散式計算與學術眾包。

nature.com (Global: 207^th place; Chinese: 205^th place)

Check Hayden, Erika. Protein prize up for grabs after retraction. Nature. 2008-02-13: news.2008.569 [2022-05-01]. ISSN 0028-0836. doi:10.1038/news.2008.569. （原始内容存档于2021-08-06）（英语）.
Ashworth, Justin; Havranek, James J.; Duarte, Carlos M.; Sussman, Django; Monnat, Raymond J.; Stoddard, Barry L.; Baker, David. Computational redesign of endonuclease DNA binding and cleavage specificity. Nature. 2006-06, 441 (7093): 656–659 [2022-05-01]. ISSN 0028-0836. PMC 2999987 . PMID 16738662. doi:10.1038/nature04818. （原始内容存档于2022-05-01）（英语）.
Nauli, Sehat; Kuhlman, Brian; Baker, David. Computer-based redesign of a protein folding pathway. Nature Structural Biology. 2001-07-01, 8 (7): 602–605 [2022-05-01]. PMID 11427890. doi:10.1038/89638. （原始内容存档于2016-06-03）.

nih.gov (Global: 5^th place; Chinese: 3^rd place)

ncbi.nlm.nih.gov

Lensink, Marc F.; Méndez, Raúl; Wodak, Shoshana J. Docking and scoring protein complexes: CAPRI 3rd Edition. Proteins: Structure, Function, and Bioinformatics. 2007-10-05, 69 (4): 704–718 [2022-05-01]. PMID 17918726. doi:10.1002/prot.21804. （原始内容存档于2022-05-01）（英语）.
Kopp, Jürgen; Bordoli, Lorenza; Battey, James N.D.; Kiefer, Florian; Schwede, Torsten. Assessment of CASP7 predictions for template-based modeling targets. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 38–56 [2022-05-01]. PMID 17894352. doi:10.1002/prot.21753. （原始内容存档于2022-05-01）（英语）.
Read, Randy J.; Chavali, Gayatri. Assessment of CASP7 predictions in the high accuracy template-based modeling category. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 27–37 [2022-05-01]. PMID 17894351. doi:10.1002/prot.21662. （原始内容存档于2022-05-01）（英语）.
Jauch, Ralf; Yeo, Hock Chuan; Kolatkar, Prasanna R.; Clarke, Neil D. Assessment of CASP7 structure predictions for template free targets. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 57–67 [2022-05-01]. PMID 17894330. doi:10.1002/prot.21771. （原始内容存档于2022-05-01）（英语）.
Das, Rhiju; Qian, Bin; Raman, Srivatsan; Vernon, Robert; Thompson, James; Bradley, Philip; Khare, Sagar; Tyka, Michael D.; Bhat, Divya. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 118–128 [2022-05-01]. PMID 17894356. doi:10.1002/prot.21636. （原始内容存档于2022-05-01）（英语）.
Wang, Chu; Schueler-Furman, Ora; Andre, Ingemar; London, Nir; Fleishman, Sarel J.; Bradley, Philip; Qian, Bin; Baker, David. RosettaDock in CAPRI rounds 6-12. Proteins: Structure, Function, and Bioinformatics. 2007-08-01, 69 (4): 758–763 [2022-05-01]. PMID 17671979. doi:10.1002/prot.21684. （原始内容存档于2022-05-01）（英语）.
Jiang, Lin; Althoff, Eric A.; Clemente, Fernando R.; Doyle, Lindsey; Röthlisberger, Daniela; Zanghellini, Alexandre; Gallaher, Jasmine L.; Betker, Jamie L.; Tanaka, Fujie. De Novo Computational Design of Retro-Aldol Enzymes. Science. 2008-03-07, 319 (5868): 1387–1391 [2022-05-01]. ISSN 0036-8075. PMC 3431203 . PMID 18323453. doi:10.1126/science.1152692. （原始内容存档于2022-02-25）（英语）.
Kuhlman, Brian; Baker, David. Native protein sequences are close to optimal for their structures. Proceedings of the National Academy of Sciences. 2000-09-12, 97 (19): 10383–10388 [2022-05-01]. ISSN 0027-8424. PMC 27033 . PMID 10984534. doi:10.1073/pnas.97.19.10383. （原始内容存档于2022-05-01）（英语）.
Thompson, Michael J.; Sievers, Stuart A.; Karanicolas, John; Ivanova, Magdalena I.; Baker, David; Eisenberg, David. The 3D profile method for identifying fibril-forming segments of proteins. Proceedings of the National Academy of Sciences. 2006-03-14, 103 (11): 4074–4078 [2022-05-01]. ISSN 0027-8424. PMC 1449648 . PMID 16537487. doi:10.1073/pnas.0511295103. （原始内容存档于2022-05-01）（英语）.
Wang, Chu; Schueler-Furman, Ora; Baker, David. Improved side-chain modeling for protein-protein docking. Protein Science. 2005-05, 14 (5): 1328–1339. PMC 2253276 . PMID 15802647. doi:10.1110/ps.041222905 （英语）.
Gray, Jeffrey J.; Moughon, Stewart; Wang, Chu; Schueler-Furman, Ora; Kuhlman, Brian; Rohl, Carol A.; Baker, David. Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations. Journal of Molecular Biology. 2003-08, 331 (1): 281–299 [2022-05-01]. PMID 12875852. doi:10.1016/S0022-2836(03)00670-3. （原始内容存档于2022-03-27）（英语）.
Schueler-Furman, Ora; Wang, Chu; Baker, David. Progress in protein-protein docking: Atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility. Proteins: Structure, Function, and Bioinformatics. 2005-06-24, 60 (2): 187–194 [2022-05-01]. PMID 15981249. doi:10.1002/prot.20556. （原始内容存档于2022-05-01）（英语）.
Lacy, D. Borden; Lin, Henry C.; Melnyk, Roman A.; Schueler-Furman, Ora; Reither, Laura; Cunningham, Kristina; Baker, David; Collier, R. John. A model of anthrax toxin lethal factor bound to protective antigen. Proceedings of the National Academy of Sciences. 2005-11-08, 102 (45): 16409–16414 [2022-05-01]. ISSN 0027-8424. PMC 1283467 . PMID 16251269. doi:10.1073/pnas.0508259102. （原始内容存档于2022-05-02）（英语）.
Albrecht, Mark T.; Li, Han; Williamson, E. Diane; LeButt, Chris S.; Flick-Smith, Helen C.; Quinn, Conrad P.; Westra, Hans; Galloway, Darrell; Mateczun, Alfred. Human Monoclonal Antibodies against Anthrax Lethal Factor and Protective Antigen Act Independently To Protect against Bacillus anthracis Infection and Enhance Endogenous Immunity to Anthrax. Infection and Immunity. 2007-11, 75 (11): 5425–5433 [2022-05-01]. ISSN 0019-9567. PMC 2168292 . PMID 17646360. doi:10.1128/IAI.00261-07. （原始内容存档于2021-08-07）（英语）.
Sprague, Elizabeth R; Wang, Chu; Baker, David; Bjorkman, Pamela J. Virgin, Skip , 编. Crystal Structure of the HSV-1 Fc Receptor Bound to Fc Reveals a Mechanism for Antibody Bipolar Bridging. PLoS Biology. 2006-05-02, 4 (6): e148. ISSN 1545-7885. PMC 1450327 . PMID 16646632. doi:10.1371/journal.pbio.0040148 （英语）.
Windbichler, N.; Papathanos, P. A.; Catteruccia, F.; Ranson, H.; Burt, A.; Crisanti, A. Homing endonuclease mediated gene targeting in Anopheles gambiae cells and embryos. Nucleic Acids Research. 2007-08-23, 35 (17): 5922–5933 [2022-05-01]. ISSN 0305-1048. PMC 2034484 . PMID 17726053. doi:10.1093/nar/gkm632. （原始内容存档于2017-07-28）（英语）.
Ashworth, Justin; Havranek, James J.; Duarte, Carlos M.; Sussman, Django; Monnat, Raymond J.; Stoddard, Barry L.; Baker, David. Computational redesign of endonuclease DNA binding and cleavage specificity. Nature. 2006-06, 441 (7093): 656–659 [2022-05-01]. ISSN 0028-0836. PMC 2999987 . PMID 16738662. doi:10.1038/nature04818. （原始内容存档于2022-05-01）（英语）.
Simons, K. T.; Bonneau, R.; Ruczinski, I.; Baker, D. Ab initio protein structure prediction of CASP III targets using ROSETTA. Proteins. 1999,. Suppl 3: 171–176 [2022-05-01]. ISSN 0887-3585. PMID 10526365. doi:10.1002/(sici)1097-0134(1999)37:3+<171::aid-prot21>3.3.co;2-q. （原始内容存档于2022-05-01）.
Nauli, Sehat; Kuhlman, Brian; Baker, David. Computer-based redesign of a protein folding pathway. Nature Structural Biology. 2001-07-01, 8 (7): 602–605 [2022-05-01]. PMID 11427890. doi:10.1038/89638. （原始内容存档于2016-06-03）.
Kuhlman, Brian; Dantas, Gautam; Ireton, Gregory C.; Varani, Gabriele; Stoddard, Barry L.; Baker, David. Design of a Novel Globular Protein Fold with Atomic-Level Accuracy. Science. 2003-11-21, 302 (5649): 1364–1368 [2022-05-01]. ISSN 0036-8075. PMID 14631033. doi:10.1126/science.1089427. （原始内容存档于2022-05-01）（英语）.
Gray, Jeffrey J.; Moughon, Stewart E.; Kortemme, Tanja; Schueler-Furman, Ora; Misura, Kira M.S.; Morozov, Alexandre V.; Baker, David. Protein-protein docking predictions for the CAPRI experiment. Proteins: Structure, Function, and Genetics. 2003-07-01, 52 (1): 118–122 [2022-05-01]. ISSN 0887-3585. PMID 12784377. doi:10.1002/prot.10384. （原始内容存档于2022-05-01）（英语）.
Daily, Michael D.; Masica, David; Sivasubramanian, Arvind; Somarouthu, Sony; Gray, Jeffrey J. CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock. Proteins: Structure, Function, and Bioinformatics. 2005-06-24, 60 (2): 181–186 [2022-05-01]. PMID 15981262. doi:10.1002/prot.20555. （原始内容存档于2022-05-01）（英语）.
Méndez, Raúl; Leplae, Raphaël; Lensink, Marc F.; Wodak, Shoshana J. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures. Proteins: Structure, Function, and Bioinformatics. 2005-06-24, 60 (2): 150–169 [2022-05-01]. PMID 15981261. doi:10.1002/prot.20551. （原始内容存档于2022-05-01）（英语）.
Aloy, Patrick; Stark, Alexander; Hadley, Caroline; Russell, Robert B. Predictions without templates: New folds, secondary structure, and contacts in CASP5. Proteins: Structure, Function, and Genetics. 2003, 53 (S6): 436–456 [2022-05-01]. ISSN 0887-3585. PMID 14579333. doi:10.1002/prot.10546. （原始内容存档于2022-05-01）（英语）.
Tress, Michael; Ezkurdia, Iakes; Graña, Osvaldo; López, Gonzalo; Valencia, Alfonso. Assessment of predictions submitted for the CASP6 comparative modeling category. Proteins: Structure, Function, and Bioinformatics. 2005, 61 (S7): 27–45 [2022-05-01]. ISSN 0887-3585. PMID 16187345. doi:10.1002/prot.20720. （原始内容存档于2022-05-01）（英语）.
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Chivian, Dylan; Kim, David E.; Malmström, Lars; Schonbrun, Jack; Rohl, Carol A.; Baker, David. Prediction of CASP6 structures using automated robetta protocols. Proteins: Structure, Function, and Bioinformatics. 2005, 61 (S7): 157–166 [2022-05-01]. ISSN 0887-3585. PMID 16187358. doi:10.1002/prot.20733. （原始内容存档于2022-05-01）（英语）.
Baek, Minkyung; DiMaio, Frank; Anishchenko, Ivan; Dauparas, Justas; Ovchinnikov, Sergey; Lee, Gyu Rie; Wang, Jue; Cong, Qian; Kinch, Lisa N.; Schaeffer, R. Dustin; Millán, Claudia; Park, Hahnbeom; Adams, Carson; Glassman, Caleb R.; DeGiovanni, Andy; Pereira, Jose H.; Rodrigues, Andria V.; van Dijk, Alberdina A.; Ebrecht, Ana C.; Opperman, Diederik J.; Sagmeister, Theo; Buhlheller, Christoph; Pavkov-Keller, Tea; Rathinaswamy, Manoj K.; Dalwadi, Udit; Yip, Calvin K.; Burke, John E.; Garcia, K. Christopher; Grishin, Nick V.; Adams, Paul D.; Read, Randy J.; Baker, David. Accurate prediction of protein structures and interactions using a three-track neural network. Science. 20 August 2021, 373 (6557): 871–876. Bibcode:2021Sci...373..871B. PMC 7612213 . PMID 34282049. doi:10.1126/science.abj8754.
Peng, Z; Wang, W; Han, R; Zhang, F; Yang, J. Protein structure prediction in the deep learning era.. Current Opinion in Structural Biology. December 2022, 77: 102495. PMID 36371845. S2CID 253470306. doi:10.1016/j.sbi.2022.102495.
Du, Zongyang; Su, Hong; Wang, Wenkai; Ye, Lisha; Wei, Hong; Peng, Zhenling; Anishchenko, Ivan; Baker, David; Yang, Jianyi. The trRosetta server for fast and accurate protein structure prediction. Nature Protocols. December 2021, 16 (12): 5634–5651. PMID 34759384. S2CID 243987300. doi:10.1038/s41596-021-00628-9 .
Malmström, Lars; Riffle, Michael; Strauss, Charlie E. M; Chivian, Dylan; Davis, Trisha N; Bonneau, Richard; Baker, David. Sali, Andrej , 编. Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology. PLoS Biology. 2007-03-20, 5 (4): e76. ISSN 1545-7885. PMC 1828141 . PMID 17373854. doi:10.1371/journal.pbio.0050076 （英语）.

pubmed.ncbi.nlm.nih.gov

Simons, K. T.; Bonneau, R.; Ruczinski, I.; Baker, D. Ab initio protein structure prediction of CASP III targets using ROSETTA. Proteins. 1999,. Suppl 3: 171–176 [2022-05-01]. ISSN 0887-3585. PMID 10526365. doi:10.1002/(sici)1097-0134(1999)37:3+<171::aid-prot21>3.3.co;2-q. （原始内容存档于2022-05-01）.

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oup.com (Global: 292^nd place; Chinese: 319^th place)

academic.oup.com

Windbichler, N.; Papathanos, P. A.; Catteruccia, F.; Ranson, H.; Burt, A.; Crisanti, A. Homing endonuclease mediated gene targeting in Anopheles gambiae cells and embryos. Nucleic Acids Research. 2007-08-23, 35 (17): 5922–5933 [2022-05-01]. ISSN 0305-1048. PMC 2034484 . PMID 17726053. doi:10.1093/nar/gkm632. （原始内容存档于2017-07-28）（英语）.

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plos.org (Global: 2,101^st place; Chinese: 1,135^th place)

dx.plos.org

Sprague, Elizabeth R; Wang, Chu; Baker, David; Bjorkman, Pamela J. Virgin, Skip , 编. Crystal Structure of the HSV-1 Fc Receptor Bound to Fc Reveals a Mechanism for Antibody Bipolar Bridging. PLoS Biology. 2006-05-02, 4 (6): e148. ISSN 1545-7885. PMC 1450327 . PMID 16646632. doi:10.1371/journal.pbio.0040148 （英语）.
Malmström, Lars; Riffle, Michael; Strauss, Charlie E. M; Chivian, Dylan; Davis, Trisha N; Bonneau, Richard; Baker, David. Sali, Andrej , 编. Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology. PLoS Biology. 2007-03-20, 5 (4): e76. ISSN 1545-7885. PMC 1828141 . PMID 17373854. doi:10.1371/journal.pbio.0050076 （英语）.

pnas.org (Global: 1,411^th place; Chinese: 890^th place)

Kuhlman, Brian; Baker, David. Native protein sequences are close to optimal for their structures. Proceedings of the National Academy of Sciences. 2000-09-12, 97 (19): 10383–10388 [2022-05-01]. ISSN 0027-8424. PMC 27033 . PMID 10984534. doi:10.1073/pnas.97.19.10383. （原始内容存档于2022-05-01）（英语）.
Thompson, Michael J.; Sievers, Stuart A.; Karanicolas, John; Ivanova, Magdalena I.; Baker, David; Eisenberg, David. The 3D profile method for identifying fibril-forming segments of proteins. Proceedings of the National Academy of Sciences. 2006-03-14, 103 (11): 4074–4078 [2022-05-01]. ISSN 0027-8424. PMC 1449648 . PMID 16537487. doi:10.1073/pnas.0511295103. （原始内容存档于2022-05-01）（英语）.
Lacy, D. Borden; Lin, Henry C.; Melnyk, Roman A.; Schueler-Furman, Ora; Reither, Laura; Cunningham, Kristina; Baker, David; Collier, R. John. A model of anthrax toxin lethal factor bound to protective antigen. Proceedings of the National Academy of Sciences. 2005-11-08, 102 (45): 16409–16414 [2022-05-01]. ISSN 0027-8424. PMC 1283467 . PMID 16251269. doi:10.1073/pnas.0508259102. （原始内容存档于2022-05-02）（英语）.

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Jiang, Lin; Althoff, Eric A.; Clemente, Fernando R.; Doyle, Lindsey; Röthlisberger, Daniela; Zanghellini, Alexandre; Gallaher, Jasmine L.; Betker, Jamie L.; Tanaka, Fujie. De Novo Computational Design of Retro-Aldol Enzymes. Science. 2008-03-07, 319 (5868): 1387–1391 [2022-05-01]. ISSN 0036-8075. PMC 3431203 . PMID 18323453. doi:10.1126/science.1152692. （原始内容存档于2022-02-25）（英语）.
Kuhlman, Brian; Dantas, Gautam; Ireton, Gregory C.; Varani, Gabriele; Stoddard, Barry L.; Baker, David. Design of a Novel Globular Protein Fold with Atomic-Level Accuracy. Science. 2003-11-21, 302 (5649): 1364–1368 [2022-05-01]. ISSN 0036-8075. PMID 14631033. doi:10.1126/science.1089427. （原始内容存档于2022-05-01）（英语）.

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Peng, Z; Wang, W; Han, R; Zhang, F; Yang, J. Protein structure prediction in the deep learning era.. Current Opinion in Structural Biology. December 2022, 77: 102495. PMID 36371845. S2CID 253470306. doi:10.1016/j.sbi.2022.102495.
Du, Zongyang; Su, Hong; Wang, Wenkai; Ye, Lisha; Wei, Hong; Peng, Zhenling; Anishchenko, Ivan; Baker, David; Yang, Jianyi. The trRosetta server for fast and accurate protein structure prediction. Nature Protocols. December 2021, 16 (12): 5634–5651. PMID 34759384. S2CID 243987300. doi:10.1038/s41596-021-00628-9 .

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Recommended System Requirements. Rosetta@home. 华盛顿大学. 2008年12月10日 [2009年1月8日]. （原始内容存档于2008年9月25日）（英语）.
Rosetta@Home FAQ (work in progress) (message 10910). Rosetta@home forums. 华盛顿大学. 2006年2月18日 [2009年1月8日]. （原始内容存档于2009年2月26日）（英语）.
David E K. Random Seed (message 3155). Rosetta@home forums. 华盛顿大学. 2005年11月14日 [2009年1月8日]. （原始内容存档于2009年2月26日）（英语）.
Rosetta及其图像的快速向导. Rosetta@home. 华盛顿大学. 2007年11月10日 [2009年1月8日]. （原始内容存档于2008年9月24日）（中文）.
David E K. Problems with minirosetta version 1.+ (Message 51199). Rosetta@home forums. 华盛顿大学. 2008年2月6日 [2009年1月8日]. （原始内容存档于2009年2月26日）（英语）.
Rosetta Commons. RosettaCommons.org. [2009年1月8日]. （原始内容存档于2008年9月15日）（英语）.
Yearly Growth of Protein Structures. RCSB Protein Data Bank. 2009年1月6日 [2009年1月8日]. （原始内容存档于2008年9月28日）（英语）.
David Baker. David Baker's Rosetta@home journal (message 55893). 华盛顿大学. 2008年9月20日 [2009年1月8日]. （原始内容存档于2008年6月23日）（英语）.
研究概况. Rosetta@home. 华盛顿大学. 2007年11月10日 [2009年1月9日]. （原始内容存档于2008年9月25日）（中文）.
Kopp, Jürgen; Bordoli, Lorenza; Battey, James N.D.; Kiefer, Florian; Schwede, Torsten. Assessment of CASP7 predictions for template-based modeling targets. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 38–56 [2022-05-01]. PMID 17894352. doi:10.1002/prot.21753. （原始内容存档于2022-05-01）（英语）.
Read, Randy J.; Chavali, Gayatri. Assessment of CASP7 predictions in the high accuracy template-based modeling category. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 27–37 [2022-05-01]. PMID 17894351. doi:10.1002/prot.21662. （原始内容存档于2022-05-01）（英语）.
Jauch, Ralf; Yeo, Hock Chuan; Kolatkar, Prasanna R.; Clarke, Neil D. Assessment of CASP7 structure predictions for template free targets. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 57–67 [2022-05-01]. PMID 17894330. doi:10.1002/prot.21771. （原始内容存档于2022-05-01）（英语）.
Das, Rhiju; Qian, Bin; Raman, Srivatsan; Vernon, Robert; Thompson, James; Bradley, Philip; Khare, Sagar; Tyka, Michael D.; Bhat, Divya. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 118–128 [2022-05-01]. PMID 17894356. doi:10.1002/prot.21636. （原始内容存档于2022-05-01）（英语）.
Wang, Chu; Schueler-Furman, Ora; Andre, Ingemar; London, Nir; Fleishman, Sarel J.; Bradley, Philip; Qian, Bin; Baker, David. RosettaDock in CAPRI rounds 6-12. Proteins: Structure, Function, and Bioinformatics. 2007-08-01, 69 (4): 758–763 [2022-05-01]. PMID 17671979. doi:10.1002/prot.21684. （原始内容存档于2022-05-01）（英语）.
Jiang, Lin; Althoff, Eric A.; Clemente, Fernando R.; Doyle, Lindsey; Röthlisberger, Daniela; Zanghellini, Alexandre; Gallaher, Jasmine L.; Betker, Jamie L.; Tanaka, Fujie. De Novo Computational Design of Retro-Aldol Enzymes. Science. 2008-03-07, 319 (5868): 1387–1391 [2022-05-01]. ISSN 0036-8075. PMC 3431203 . PMID 18323453. doi:10.1126/science.1152692. （原始内容存档于2022-02-25）（英语）.
Check Hayden, Erika. Protein prize up for grabs after retraction. Nature. 2008-02-13: news.2008.569 [2022-05-01]. ISSN 0028-0836. doi:10.1038/news.2008.569. （原始内容存档于2021-08-06）（英语）.
相关疾病研究. Rosetta@home. 华盛顿大学. 2007年11月10日 [2009年1月9日]. （原始内容存档于2008年9月23日）（中文）.
David Baker. David Baker's Rosetta@home journal. 华盛顿大学. [2009年1月9日]. （原始内容存档于2008年9月25日）（英语）.
Kuhlman, Brian; Baker, David. Native protein sequences are close to optimal for their structures. Proceedings of the National Academy of Sciences. 2000-09-12, 97 (19): 10383–10388 [2022-05-01]. ISSN 0027-8424. PMC 27033 . PMID 10984534. doi:10.1073/pnas.97.19.10383. （原始内容存档于2022-05-01）（英语）.
Thompson, Michael J.; Sievers, Stuart A.; Karanicolas, John; Ivanova, Magdalena I.; Baker, David; Eisenberg, David. The 3D profile method for identifying fibril-forming segments of proteins. Proceedings of the National Academy of Sciences. 2006-03-14, 103 (11): 4074–4078 [2022-05-01]. ISSN 0027-8424. PMC 1449648 . PMID 16537487. doi:10.1073/pnas.0511295103. （原始内容存档于2022-05-01）（英语）.
amyloid fibril structure prediction. Rosetta@home forums. 华盛顿大学. [2009年1月9日]. （原始内容存档于2009年2月26日）（英语）.
David Baker. Publications on R@H's Alzheimer's work? (message 54681). Rosetta@home forums. 华盛顿大学. [2009年1月9日]. （原始内容存档于2009年2月26日）（英语）.
Gray, Jeffrey J.; Moughon, Stewart; Wang, Chu; Schueler-Furman, Ora; Kuhlman, Brian; Rohl, Carol A.; Baker, David. Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations. Journal of Molecular Biology. 2003-08, 331 (1): 281–299 [2022-05-01]. PMID 12875852. doi:10.1016/S0022-2836(03)00670-3. （原始内容存档于2022-03-27）（英语）.
Schueler-Furman, Ora; Wang, Chu; Baker, David. Progress in protein-protein docking: Atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility. Proteins: Structure, Function, and Bioinformatics. 2005-06-24, 60 (2): 187–194 [2022-05-01]. PMID 15981249. doi:10.1002/prot.20556. （原始内容存档于2022-05-01）（英语）.
Lacy, D. Borden; Lin, Henry C.; Melnyk, Roman A.; Schueler-Furman, Ora; Reither, Laura; Cunningham, Kristina; Baker, David; Collier, R. John. A model of anthrax toxin lethal factor bound to protective antigen. Proceedings of the National Academy of Sciences. 2005-11-08, 102 (45): 16409–16414 [2022-05-01]. ISSN 0027-8424. PMC 1283467 . PMID 16251269. doi:10.1073/pnas.0508259102. （原始内容存档于2022-05-02）（英语）.
Albrecht, Mark T.; Li, Han; Williamson, E. Diane; LeButt, Chris S.; Flick-Smith, Helen C.; Quinn, Conrad P.; Westra, Hans; Galloway, Darrell; Mateczun, Alfred. Human Monoclonal Antibodies against Anthrax Lethal Factor and Protective Antigen Act Independently To Protect against Bacillus anthracis Infection and Enhance Endogenous Immunity to Anthrax. Infection and Immunity. 2007-11, 75 (11): 5425–5433 [2022-05-01]. ISSN 0019-9567. PMC 2168292 . PMID 17646360. doi:10.1128/IAI.00261-07. （原始内容存档于2021-08-07）（英语）.
Paulson, Tom. Gates Foundation awards $287 million for HIV vaccine research. Seattle Post-Intelligencer. 2006年7月19日 [2009年1月9日]. （原始内容存档于2022年9月5日）（英语）.
Liu Y; et al. Development of IgG1 b12 scaffolds and HIV-1 env-based outer domain immunogens capable of eliciting and detecting IgG1 b12-like antibodies (PDF). Global HIV Vaccine Enterprise. 2007 [2008年9月28日]. （原始内容 (PDF)存档于2009年2月25日）（英语）.
David Baker. Dr. Baker's journal archive (read only) (message 40756). 华盛顿大学. [2009年1月9日]. （原始内容存档于2009年2月26日）（英语）.
Dr. Austin Burt. Homing Endonuclease Genes: New Tools for Mosquito Population Engineering and Control. Grand Challenges in Global Health. [2009年1月9日]. （原始内容存档于2008年7月6日）（英语）.
Windbichler, N.; Papathanos, P. A.; Catteruccia, F.; Ranson, H.; Burt, A.; Crisanti, A. Homing endonuclease mediated gene targeting in Anopheles gambiae cells and embryos. Nucleic Acids Research. 2007-08-23, 35 (17): 5922–5933 [2022-05-01]. ISSN 0305-1048. PMC 2034484 . PMID 17726053. doi:10.1093/nar/gkm632. （原始内容存档于2017-07-28）（英语）.
Ashworth, Justin; Havranek, James J.; Duarte, Carlos M.; Sussman, Django; Monnat, Raymond J.; Stoddard, Barry L.; Baker, David. Computational redesign of endonuclease DNA binding and cleavage specificity. Nature. 2006-06, 441 (7093): 656–659 [2022-05-01]. ISSN 0028-0836. PMC 2999987 . PMID 16738662. doi:10.1038/nature04818. （原始内容存档于2022-05-01）（英语）.
Rosetta@home Rallies a Legion of Computers Against the Coronavirus. HPCwire. 2020-03-24 [2022-05-01]. （原始内容存档于2020-04-09）（美国英语）.
Simons, K. T.; Bonneau, R.; Ruczinski, I.; Baker, D. Ab initio protein structure prediction of CASP III targets using ROSETTA. Proteins. 1999,. Suppl 3: 171–176 [2022-05-01]. ISSN 0887-3585. PMID 10526365. doi:10.1002/(sici)1097-0134(1999)37:3+<171::aid-prot21>3.3.co;2-q. （原始内容存档于2022-05-01）.
Interview with David Baker. Team Picard Distributed Computing. 2006年4月28日 [2009年1月9日]. （原始内容存档于2009年2月18日）（英语）.
News archive. Rosetta@home. 华盛顿大学. [2009年1月9日]. （原始内容存档于2016年6月16日）（英语）.
Nauli, Sehat; Kuhlman, Brian; Baker, David. Computer-based redesign of a protein folding pathway. Nature Structural Biology. 2001-07-01, 8 (7): 602–605 [2022-05-01]. PMID 11427890. doi:10.1038/89638. （原始内容存档于2016-06-03）.
Kuhlman, Brian; Dantas, Gautam; Ireton, Gregory C.; Varani, Gabriele; Stoddard, Barry L.; Baker, David. Design of a Novel Globular Protein Fold with Atomic-Level Accuracy. Science. 2003-11-21, 302 (5649): 1364–1368 [2022-05-01]. ISSN 0036-8075. PMID 14631033. doi:10.1126/science.1089427. （原始内容存档于2022-05-01）（英语）.
David S. Goodsell. Designer Proteins - October 2005 Molecule of the Month. RCSB Protein Data Bank. 2005年10月 [2009年1月9日]. （原始内容存档于2008年9月28日）（英语）.
Kuhlman Lab. 北卡罗来纳大学教堂山分校. [2009年1月8日]. （原始内容存档于2008年10月10日）（英语）.
RosettaDesign web server. 北卡罗来纳大学教堂山分校. [2009年1月8日]. （原始内容存档于2008年9月13日）（英语）.
Gray, Jeffrey J.; Moughon, Stewart E.; Kortemme, Tanja; Schueler-Furman, Ora; Misura, Kira M.S.; Morozov, Alexandre V.; Baker, David. Protein-protein docking predictions for the CAPRI experiment. Proteins: Structure, Function, and Genetics. 2003-07-01, 52 (1): 118–122 [2022-05-01]. ISSN 0887-3585. PMID 12784377. doi:10.1002/prot.10384. （原始内容存档于2022-05-01）（英语）.
Daily, Michael D.; Masica, David; Sivasubramanian, Arvind; Somarouthu, Sony; Gray, Jeffrey J. CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock. Proteins: Structure, Function, and Bioinformatics. 2005-06-24, 60 (2): 181–186 [2022-05-01]. PMID 15981262. doi:10.1002/prot.20555. （原始内容存档于2022-05-01）（英语）.
Méndez, Raúl; Leplae, Raphaël; Lensink, Marc F.; Wodak, Shoshana J. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures. Proteins: Structure, Function, and Bioinformatics. 2005-06-24, 60 (2): 150–169 [2022-05-01]. PMID 15981261. doi:10.1002/prot.20551. （原始内容存档于2022-05-01）（英语）.
Chu Wang. protein-protein docking at Rosetta@Home. 华盛顿大学. [2008年9月7日]. （原始内容存档于2008年6月23日）（英语）.
Robetta: full-chain protein structure prediction server. 华盛顿大学. [2009年1月9日]. （原始内容存档于2008年9月25日）（英语）.
Aloy, Patrick; Stark, Alexander; Hadley, Caroline; Russell, Robert B. Predictions without templates: New folds, secondary structure, and contacts in CASP5. Proteins: Structure, Function, and Genetics. 2003, 53 (S6): 436–456 [2022-05-01]. ISSN 0887-3585. PMID 14579333. doi:10.1002/prot.10546. （原始内容存档于2022-05-01）（英语）.
Tress, Michael; Ezkurdia, Iakes; Graña, Osvaldo; López, Gonzalo; Valencia, Alfonso. Assessment of predictions submitted for the CASP6 comparative modeling category. Proteins: Structure, Function, and Bioinformatics. 2005, 61 (S7): 27–45 [2022-05-01]. ISSN 0887-3585. PMID 16187345. doi:10.1002/prot.20720. （原始内容存档于2022-05-01）（英语）.
Battey, James N. D.; Kopp, Jürgen; Bordoli, Lorenza; Read, Randy J.; Clarke, Neil D.; Schwede, Torsten. Automated server predictions in CASP7. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 68–82 [2022-05-01]. PMID 17894354. doi:10.1002/prot.21761. （原始内容存档于2022-05-01）（英语）.
Chivian, Dylan; Kim, David E.; Malmström, Lars; Schonbrun, Jack; Rohl, Carol A.; Baker, David. Prediction of CASP6 structures using automated robetta protocols. Proteins: Structure, Function, and Bioinformatics. 2005, 61 (S7): 157–166 [2022-05-01]. ISSN 0887-3585. PMID 16187358. doi:10.1002/prot.20733. （原始内容存档于2022-05-01）（英语）.
David Baker. David Baker's Rosetta@home journal (message 52902). 华盛顿大学. 2008年5月7日 [2009年1月9日]. （原始内容存档于2008年6月23日）（英语）.
David Baker. David Baker's Rosetta@home journal (message 52963). 华盛顿大学. 2008年5月10日 [2009年1月9日]. （原始内容存档于2008年6月23日）（英语）.
Players. Foldit. [2009年1月9日]. （原始内容存档于2015年2月14日）（英语）.
Frequently Asked Questions. Foldit. [2009年1月9日]. （原始内容存档于2008年9月14日）（英语）.
Zoey. 玩遊戲可以破解病毒？蛋白質摺疊遊戲 Foldit 新增 COVID-19 謎題，全球玩家都能提供幫助！. LINE. 2020-03-20 [2020-04-11]. （原始内容存档于2020-04-11）（中文（臺灣））. 來自華盛頓大學的蛋白質摺疊遊戲 Foldit 由電腦科學和工程學系與生物化學學系共同開發，2008 年推出初始版本，透過遊戲的方式讓任何人都可以參與蛋白質結構預測，利用人腦的 3D 圖像視覺能力、非專業領域玩家的直覺思考模式，改善現有蛋白質摺疊軟體的演算法，甚至提供具有可能性的方案，實現分散式計算與學術眾包。
Project list - BOINC. 加利福尼亚大学伯克利分校. [2009年1月8日]. （原始内容存档于2008年9月8日）（英语）.
Bonneau R. World Community Grid Message Board Posts: HPF -> HPF2 transition. 纽约大学博诺实验室. 2006年5月26日 [2009年1月9日]. （原始内容存档于2008年8月29日）（英语）.
List of Richard Bonneau's publications. 纽约大学博诺实验室. [2009年1月8日]. （原始内容存档于2008年7月7日）（英语）.
Bonneau R. World Community Grid Message Board Posts. 纽约大学博诺实验室. [2009年1月8日]. （原始内容存档于2008年7月4日）（英语）.
Developing new application areas for P@H. The Brooks Research Group. [2009年1月9日]. （原始内容存档于2008年11月28日）（英语）.
Carrillo-Tripp M. dTASSER. The Scripps Research Institute. 2007年2月 [2009年1月9日]. （原始内容存档于2007年7月6日）（英语）.
RALPH@home. 华盛顿大学. [2009年1月9日]. （原始内容存档于2016年1月13日）（英语）.
The new credit system explained. 华盛顿大学. 2006年8月24日 [2009年1月9日]. （原始内容存档于2009年2月2日）（英语）.
Project credit comparison. boincstats.com. [2009年1月9日]. （原始内容存档于2008年9月13日）（英语）.
Credit divided over projects. boincstats.com. [2010年11月23日]. （原始内容存档于2009年3月26日）（英语）.
Das, Rhiju; Qian, Bin; Raman, Srivatsan; Vernon, Robert; Thompson, James; Bradley, Philip; Khare, Sagar; Tyka, Michael D.; Bhat, Divya. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 118–128 [2022-05-01]. doi:10.1002/prot.21636. （原始内容存档于2022-05-01）（英语）.
Predictor of the day archive. Rosetta@home. 华盛顿大学. [2009年1月9日]. （原始内容存档于2008年9月24日）（英语）.
Rosetta@home. 华盛顿大学. [2009年1月9日]. （原始内容存档于2016年1月3日）（中文）.

webcitation.org (Global: 25^th place; Chinese: 22^nd place)

UW TechTransfer Home : Digital Ventures : UW Technology : Express Licenses : Rosetta. UW TechTransfer. [2009年1月8日]. （原始内容存档于2012年2月16日）（英语）.
Folding@home Diseases Studied FAQ. 斯坦福大学. 2007年11月3日 [2009年1月9日]. （原始内容存档于2012年9月21日）（英语）.
About Folding@home. 斯坦福大学. 2008年9月17日 [2009年1月9日]. （原始内容存档于2012年9月21日）（英语）.
Client statistics by OS. 斯坦福大学. [2009年2月8日]. （原始内容存档于2012年9月21日）（英语）.

wiley.com (Global: 150^th place; Chinese: 146^th place)

onlinelibrary.wiley.com

Lensink, Marc F.; Méndez, Raúl; Wodak, Shoshana J. Docking and scoring protein complexes: CAPRI 3rd Edition. Proteins: Structure, Function, and Bioinformatics. 2007-10-05, 69 (4): 704–718 [2022-05-01]. PMID 17918726. doi:10.1002/prot.21804. （原始内容存档于2022-05-01）（英语）.
Kopp, Jürgen; Bordoli, Lorenza; Battey, James N.D.; Kiefer, Florian; Schwede, Torsten. Assessment of CASP7 predictions for template-based modeling targets. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 38–56 [2022-05-01]. PMID 17894352. doi:10.1002/prot.21753. （原始内容存档于2022-05-01）（英语）.
Read, Randy J.; Chavali, Gayatri. Assessment of CASP7 predictions in the high accuracy template-based modeling category. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 27–37 [2022-05-01]. PMID 17894351. doi:10.1002/prot.21662. （原始内容存档于2022-05-01）（英语）.
Jauch, Ralf; Yeo, Hock Chuan; Kolatkar, Prasanna R.; Clarke, Neil D. Assessment of CASP7 structure predictions for template free targets. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 57–67 [2022-05-01]. PMID 17894330. doi:10.1002/prot.21771. （原始内容存档于2022-05-01）（英语）.
Das, Rhiju; Qian, Bin; Raman, Srivatsan; Vernon, Robert; Thompson, James; Bradley, Philip; Khare, Sagar; Tyka, Michael D.; Bhat, Divya. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 118–128 [2022-05-01]. PMID 17894356. doi:10.1002/prot.21636. （原始内容存档于2022-05-01）（英语）.
Wang, Chu; Schueler-Furman, Ora; Andre, Ingemar; London, Nir; Fleishman, Sarel J.; Bradley, Philip; Qian, Bin; Baker, David. RosettaDock in CAPRI rounds 6-12. Proteins: Structure, Function, and Bioinformatics. 2007-08-01, 69 (4): 758–763 [2022-05-01]. PMID 17671979. doi:10.1002/prot.21684. （原始内容存档于2022-05-01）（英语）.
Schueler-Furman, Ora; Wang, Chu; Baker, David. Progress in protein-protein docking: Atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility. Proteins: Structure, Function, and Bioinformatics. 2005-06-24, 60 (2): 187–194 [2022-05-01]. PMID 15981249. doi:10.1002/prot.20556. （原始内容存档于2022-05-01）（英语）.
Gray, Jeffrey J.; Moughon, Stewart E.; Kortemme, Tanja; Schueler-Furman, Ora; Misura, Kira M.S.; Morozov, Alexandre V.; Baker, David. Protein-protein docking predictions for the CAPRI experiment. Proteins: Structure, Function, and Genetics. 2003-07-01, 52 (1): 118–122 [2022-05-01]. ISSN 0887-3585. PMID 12784377. doi:10.1002/prot.10384. （原始内容存档于2022-05-01）（英语）.
Daily, Michael D.; Masica, David; Sivasubramanian, Arvind; Somarouthu, Sony; Gray, Jeffrey J. CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock. Proteins: Structure, Function, and Bioinformatics. 2005-06-24, 60 (2): 181–186 [2022-05-01]. PMID 15981262. doi:10.1002/prot.20555. （原始内容存档于2022-05-01）（英语）.
Méndez, Raúl; Leplae, Raphaël; Lensink, Marc F.; Wodak, Shoshana J. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures. Proteins: Structure, Function, and Bioinformatics. 2005-06-24, 60 (2): 150–169 [2022-05-01]. PMID 15981261. doi:10.1002/prot.20551. （原始内容存档于2022-05-01）（英语）.
Aloy, Patrick; Stark, Alexander; Hadley, Caroline; Russell, Robert B. Predictions without templates: New folds, secondary structure, and contacts in CASP5. Proteins: Structure, Function, and Genetics. 2003, 53 (S6): 436–456 [2022-05-01]. ISSN 0887-3585. PMID 14579333. doi:10.1002/prot.10546. （原始内容存档于2022-05-01）（英语）.
Tress, Michael; Ezkurdia, Iakes; Graña, Osvaldo; López, Gonzalo; Valencia, Alfonso. Assessment of predictions submitted for the CASP6 comparative modeling category. Proteins: Structure, Function, and Bioinformatics. 2005, 61 (S7): 27–45 [2022-05-01]. ISSN 0887-3585. PMID 16187345. doi:10.1002/prot.20720. （原始内容存档于2022-05-01）（英语）.
Battey, James N. D.; Kopp, Jürgen; Bordoli, Lorenza; Read, Randy J.; Clarke, Neil D.; Schwede, Torsten. Automated server predictions in CASP7. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 68–82 [2022-05-01]. PMID 17894354. doi:10.1002/prot.21761. （原始内容存档于2022-05-01）（英语）.
Chivian, Dylan; Kim, David E.; Malmström, Lars; Schonbrun, Jack; Rohl, Carol A.; Baker, David. Prediction of CASP6 structures using automated robetta protocols. Proteins: Structure, Function, and Bioinformatics. 2005, 61 (S7): 157–166 [2022-05-01]. ISSN 0887-3585. PMID 16187358. doi:10.1002/prot.20733. （原始内容存档于2022-05-01）（英语）.
Das, Rhiju; Qian, Bin; Raman, Srivatsan; Vernon, Robert; Thompson, James; Bradley, Philip; Khare, Sagar; Tyka, Michael D.; Bhat, Divya. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins: Structure, Function, and Bioinformatics. 2007, 69 (S8): 118–128 [2022-05-01]. doi:10.1002/prot.21636. （原始内容存档于2022-05-01）（英语）.

doi.wiley.com

Wang, Chu; Schueler-Furman, Ora; Baker, David. Improved side-chain modeling for protein-protein docking. Protein Science. 2005-05, 14 (5): 1328–1339. PMC 2253276 . PMID 15802647. doi:10.1110/ps.041222905 （英语）.

worldcat.org (Global: 4^th place; Chinese: 4^th place)

（英文）Bourne PE, Helge W (编). Structural Bioinformatics. Hoboken, NJ: Wiley-Liss. 2003. ISBN 978-0471201991. OCLC 50199108.
Jiang, Lin; Althoff, Eric A.; Clemente, Fernando R.; Doyle, Lindsey; Röthlisberger, Daniela; Zanghellini, Alexandre; Gallaher, Jasmine L.; Betker, Jamie L.; Tanaka, Fujie. De Novo Computational Design of Retro-Aldol Enzymes. Science. 2008-03-07, 319 (5868): 1387–1391 [2022-05-01]. ISSN 0036-8075. PMC 3431203 . PMID 18323453. doi:10.1126/science.1152692. （原始内容存档于2022-02-25）（英语）.
Check Hayden, Erika. Protein prize up for grabs after retraction. Nature. 2008-02-13: news.2008.569 [2022-05-01]. ISSN 0028-0836. doi:10.1038/news.2008.569. （原始内容存档于2021-08-06）（英语）.
Kuhlman, Brian; Baker, David. Native protein sequences are close to optimal for their structures. Proceedings of the National Academy of Sciences. 2000-09-12, 97 (19): 10383–10388 [2022-05-01]. ISSN 0027-8424. PMC 27033 . PMID 10984534. doi:10.1073/pnas.97.19.10383. （原始内容存档于2022-05-01）（英语）.
Thompson, Michael J.; Sievers, Stuart A.; Karanicolas, John; Ivanova, Magdalena I.; Baker, David; Eisenberg, David. The 3D profile method for identifying fibril-forming segments of proteins. Proceedings of the National Academy of Sciences. 2006-03-14, 103 (11): 4074–4078 [2022-05-01]. ISSN 0027-8424. PMC 1449648 . PMID 16537487. doi:10.1073/pnas.0511295103. （原始内容存档于2022-05-01）（英语）.
Lacy, D. Borden; Lin, Henry C.; Melnyk, Roman A.; Schueler-Furman, Ora; Reither, Laura; Cunningham, Kristina; Baker, David; Collier, R. John. A model of anthrax toxin lethal factor bound to protective antigen. Proceedings of the National Academy of Sciences. 2005-11-08, 102 (45): 16409–16414 [2022-05-01]. ISSN 0027-8424. PMC 1283467 . PMID 16251269. doi:10.1073/pnas.0508259102. （原始内容存档于2022-05-02）（英语）.
Albrecht, Mark T.; Li, Han; Williamson, E. Diane; LeButt, Chris S.; Flick-Smith, Helen C.; Quinn, Conrad P.; Westra, Hans; Galloway, Darrell; Mateczun, Alfred. Human Monoclonal Antibodies against Anthrax Lethal Factor and Protective Antigen Act Independently To Protect against Bacillus anthracis Infection and Enhance Endogenous Immunity to Anthrax. Infection and Immunity. 2007-11, 75 (11): 5425–5433 [2022-05-01]. ISSN 0019-9567. PMC 2168292 . PMID 17646360. doi:10.1128/IAI.00261-07. （原始内容存档于2021-08-07）（英语）.
Sprague, Elizabeth R; Wang, Chu; Baker, David; Bjorkman, Pamela J. Virgin, Skip , 编. Crystal Structure of the HSV-1 Fc Receptor Bound to Fc Reveals a Mechanism for Antibody Bipolar Bridging. PLoS Biology. 2006-05-02, 4 (6): e148. ISSN 1545-7885. PMC 1450327 . PMID 16646632. doi:10.1371/journal.pbio.0040148 （英语）.
Windbichler, N.; Papathanos, P. A.; Catteruccia, F.; Ranson, H.; Burt, A.; Crisanti, A. Homing endonuclease mediated gene targeting in Anopheles gambiae cells and embryos. Nucleic Acids Research. 2007-08-23, 35 (17): 5922–5933 [2022-05-01]. ISSN 0305-1048. PMC 2034484 . PMID 17726053. doi:10.1093/nar/gkm632. （原始内容存档于2017-07-28）（英语）.
Ashworth, Justin; Havranek, James J.; Duarte, Carlos M.; Sussman, Django; Monnat, Raymond J.; Stoddard, Barry L.; Baker, David. Computational redesign of endonuclease DNA binding and cleavage specificity. Nature. 2006-06, 441 (7093): 656–659 [2022-05-01]. ISSN 0028-0836. PMC 2999987 . PMID 16738662. doi:10.1038/nature04818. （原始内容存档于2022-05-01）（英语）.
Simons, K. T.; Bonneau, R.; Ruczinski, I.; Baker, D. Ab initio protein structure prediction of CASP III targets using ROSETTA. Proteins. 1999,. Suppl 3: 171–176 [2022-05-01]. ISSN 0887-3585. PMID 10526365. doi:10.1002/(sici)1097-0134(1999)37:3+<171::aid-prot21>3.3.co;2-q. （原始内容存档于2022-05-01）.
Kuhlman, Brian; Dantas, Gautam; Ireton, Gregory C.; Varani, Gabriele; Stoddard, Barry L.; Baker, David. Design of a Novel Globular Protein Fold with Atomic-Level Accuracy. Science. 2003-11-21, 302 (5649): 1364–1368 [2022-05-01]. ISSN 0036-8075. PMID 14631033. doi:10.1126/science.1089427. （原始内容存档于2022-05-01）（英语）.
Gray, Jeffrey J.; Moughon, Stewart E.; Kortemme, Tanja; Schueler-Furman, Ora; Misura, Kira M.S.; Morozov, Alexandre V.; Baker, David. Protein-protein docking predictions for the CAPRI experiment. Proteins: Structure, Function, and Genetics. 2003-07-01, 52 (1): 118–122 [2022-05-01]. ISSN 0887-3585. PMID 12784377. doi:10.1002/prot.10384. （原始内容存档于2022-05-01）（英语）.
Aloy, Patrick; Stark, Alexander; Hadley, Caroline; Russell, Robert B. Predictions without templates: New folds, secondary structure, and contacts in CASP5. Proteins: Structure, Function, and Genetics. 2003, 53 (S6): 436–456 [2022-05-01]. ISSN 0887-3585. PMID 14579333. doi:10.1002/prot.10546. （原始内容存档于2022-05-01）（英语）.
Tress, Michael; Ezkurdia, Iakes; Graña, Osvaldo; López, Gonzalo; Valencia, Alfonso. Assessment of predictions submitted for the CASP6 comparative modeling category. Proteins: Structure, Function, and Bioinformatics. 2005, 61 (S7): 27–45 [2022-05-01]. ISSN 0887-3585. PMID 16187345. doi:10.1002/prot.20720. （原始内容存档于2022-05-01）（英语）.
Chivian, Dylan; Kim, David E.; Malmström, Lars; Schonbrun, Jack; Rohl, Carol A.; Baker, David. Prediction of CASP6 structures using automated robetta protocols. Proteins: Structure, Function, and Bioinformatics. 2005, 61 (S7): 157–166 [2022-05-01]. ISSN 0887-3585. PMID 16187358. doi:10.1002/prot.20733. （原始内容存档于2022-05-01）（英语）.
Malmström, Lars; Riffle, Michael; Strauss, Charlie E. M; Chivian, Dylan; Davis, Trisha N; Bonneau, Richard; Baker, David. Sali, Andrej , 编. Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology. PLoS Biology. 2007-03-20, 5 (4): e76. ISSN 1545-7885. PMC 1828141 . PMID 17373854. doi:10.1371/journal.pbio.0050076 （英语）.

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