代谢物组 (Chinese Wikipedia)

Analysis of information sources in references of the Wikipedia article "代谢物组" in Chinese language version.

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21nih.gov

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20doi.org

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6archive.org

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archive.org

Oliver, SG; Winson MK; Kell DB; Baganz F. Systematic functional analysis of the yeast genome. Trends Biotechnol. September 1998, 16 (9): 373–8. PMID 9744112. doi:10.1016/S0167-7799(98)01214-1.
Tweeddale, H; Notley-McRobb L; Ferenci T. Effect of slow growth on metabolism of Escherichia coli, as revealed by global metabolite pool ("metabolome") analysis.. J Bacteriol. Oct 1998, 180 (19): 5109–16. PMC 107546 . PMID 9748443.
Harrigan, G. G. & Goodacre, R. (eds). Metabolic Profiling: Its Role in Biomarker Discovery and Gene Function Analysis.. Boston: Kluwer Academic Publishers. 2003. ISBN 1-4020-7370-4.
Weckwerth, W. Metabolomics in systems biology. Annu Rev Plant Biol. 2003, 54: 669–89. PMID 14503007. doi:10.1146/annurev.arplant.54.031902.135014.
Goodacre, R.; Vaidyanathan S; Dunn WB; Harrigan GG; Kell DB. Metabolomics by numbers: acquiring and understanding global metabolite data.. Trends Biotechnol. 2004, 22 (5): 245–52. PMID 15109811. doi:10.1016/j.tibtech.2004.03.007.
Mueller, LA; Zhang P; Rhee SY. AraCyc: a biochemical pathway database for Arabidopsis.. Plant Physiol. June 2003, 132 (2): 453–60. PMC 166988 . PMID 12805578. doi:10.1104/pp.102.017236.

doi.org

Oliver, SG; Winson MK; Kell DB; Baganz F. Systematic functional analysis of the yeast genome. Trends Biotechnol. September 1998, 16 (9): 373–8. PMID 9744112. doi:10.1016/S0167-7799(98)01214-1.
Wishart, DS. Current progress in computational metabolomics. Brief Bioinform. September 2007, 8 (5): 279–93. PMID 17626065. doi:10.1093/bib/bbm030.
Nordström, A; O'Maille G; Qin C; Siuzdak G. Nonlinear data alignment for UPLC-MS and HPLC-MS based metabolomics: quantitative analysis of endogenous and exogenous metabolites in human serum. Anal. Chem. 2006, 78 (10): 3289–95. PMID 16689529. doi:10.1021/ac060245f.
Fiehn, O.; Kloska S; Altmann T. Integrated studies on plant biology using multiparallel techniques.. Curr. Opin. Biotechnol. 2001, 12 (1): 82–6. PMID 11167078. doi:10.1016/S0958-1669(00)00165-8.
Fiehn, O. Combining Genomics, Metabolome Analysis, and Biochemical Modelling to Understand Metabolic Networks.. Comp. Funct. Genomics. 2001, 2 (3): 155–68. PMC 2447208 . PMID 18628911. doi:10.1002/cfg.82.
Weckwerth, W. Metabolomics in systems biology. Annu Rev Plant Biol. 2003, 54: 669–89. PMID 14503007. doi:10.1146/annurev.arplant.54.031902.135014.
Goodacre, R.; Vaidyanathan S; Dunn WB; Harrigan GG; Kell DB. Metabolomics by numbers: acquiring and understanding global metabolite data.. Trends Biotechnol. 2004, 22 (5): 245–52. PMID 15109811. doi:10.1016/j.tibtech.2004.03.007.
Wishart, DS; Tzur D; Knox C; et al. HMDB: the Human Metabolome Database. Nucleic Acids Research. January 2007, 35 (Database issue): D521–6. PMC 1899095 . PMID 17202168. doi:10.1093/nar/gkl923.
Jewison T, Neveu V, Lee J, Knox C, Liu P, Mandal R, Murthy RK, Sinelnikov I, Guo AC, Wilson M, Djoumbou Y, Wishart DS. The Yeast Metabolome Database.. Nucleic Acids Research. Jan 2012, 40 (Database issue): D815–20. PMC 3245085 . PMID 22064855. doi:10.1093/nar/gkr916.
Guo, A.; Jewison T; Wilson M; Liu Y; Knox C; Djoumbou Y; Lo P; Mandal R; Krishnamurthy R; Wishart DS. ECMDB: the E. coli Metabolome Database. Nucleic Acids Res. Jan 2013, 41 (Database issue): D625–30. PMC 3531117 . PMID 23109553. doi:10.1093/nar/gks992.
Mueller, LA; Zhang P; Rhee SY. AraCyc: a biochemical pathway database for Arabidopsis.. Plant Physiol. June 2003, 132 (2): 453–60. PMC 166988 . PMID 12805578. doi:10.1104/pp.102.017236.
Bouatra S, Aziat F, Mandal R, Guo AC, Wilson MR, Knox C, Bjorndahl TC, Krishnamurthy R, Saleem F, Liu P, Dame ZT, Poelzer J, Huynh J, Yallou FS, Psychogios N, Dong E, Bogumil R, Roehring C, Wishart DS. The human urine metabolome.. PLoS ONE. Sep 2013, 8 (9): e73076. PMC 3762851 . PMID 24023812. doi:10.1371/journal.pone.0073076.
Mandal, R; Guo AC; Chaudhary KK; Liu P; Yallou FS; Dong E; Aziat F; Wishart DS. Multi-platform characterization of the human cerebrospinal fluid metabolome: a comprehensive and quantitative update. Genome Med. Apr 2012, 4 (4): 38. PMC 3446266 . PMID 22546835. doi:10.1186/gm337.
Psychogios N, Hau DD, Peng J, Guo AC, Mandal R, Bouatra S, Sinelnikov I, Krishnamurthy R, Eisner R, Gautam B, Young N, Xia J, Knox C, Dong E, Huang P, Hollander Z, Pedersen TL, Smith SR, Bamforth F, Greiner R, McManus B, Newman JW, Goodfriend T, Wishart DS. The human serum metabolome.. PLoS ONE. Feb 2011, 6 (2): e16957. PMC 3040193 . PMID 21359215. doi:10.1371/journal.pone.0016957.
Kanehisa, M.; Goto S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 2000, 28 (1): 27–30. PMC 102409 . PMID 10592173. doi:10.1093/nar/28.1.27.
Haug K, Salek RM, Conesa P, Hastings J, de Matos P, Rijnbeek M, Mahendraker T, Williams M, Neumann S, Rocca-Serra P, Maguire E, González-Beltrán A, Sansone SA, Griffin JL, Steinbeck C. MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data. Nucleic Acids Res. 2013, 41 (Database issue): D781–6. PMC 3531110 . PMID 23109552. doi:10.1093/nar/gks1004.
Kopka, J; Schauer N; Krueger S; Birkemeyer C; Usadel B; Bergmuller E; Dormann P; Weckwerth W; Gibon Y; Stitt M; Willmitzer L; Fernie AR; Steinhauser D. GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics. 2005, 21 (8): 1635–1638. PMID 15613389. doi:10.1093/bioinformatics/bti236.
Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, Shearer AG, Zhang P, Karp PD. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. January 2010, 38 (Database issue): D473–9. PMC 2808959 . PMID 19850718. doi:10.1093/nar/gkp875.
Fahy, E.; Sud M; Cotter D; Subramaniam S. LIPID MAPS online tools for lipid research.. Nucleic Acids Res. July 2007, 35 (Web Server issue): W606–12. PMC 1933166 . PMID 17584797. doi:10.1093/nar/gkm324.
Smith, CA; I'Maille G; Want EJ; Qin C; Trauger SA; Brandon TR; Custodio DE; Abagyan R; Siuzdak G. METLIN: a metabolite mass spectral database.. Ther Drug Monit. 2005, 27 (6): 747–51. PMID 16404815. doi:10.1097/01.ftd.0000179845.53213.39.

nih.gov

ncbi.nlm.nih.gov

Oliver, SG; Winson MK; Kell DB; Baganz F. Systematic functional analysis of the yeast genome. Trends Biotechnol. September 1998, 16 (9): 373–8. PMID 9744112. doi:10.1016/S0167-7799(98)01214-1.
Wishart, DS. Current progress in computational metabolomics. Brief Bioinform. September 2007, 8 (5): 279–93. PMID 17626065. doi:10.1093/bib/bbm030.
Nordström, A; O'Maille G; Qin C; Siuzdak G. Nonlinear data alignment for UPLC-MS and HPLC-MS based metabolomics: quantitative analysis of endogenous and exogenous metabolites in human serum. Anal. Chem. 2006, 78 (10): 3289–95. PMID 16689529. doi:10.1021/ac060245f.
Tweeddale, H; Notley-McRobb L; Ferenci T. Effect of slow growth on metabolism of Escherichia coli, as revealed by global metabolite pool ("metabolome") analysis.. J Bacteriol. Oct 1998, 180 (19): 5109–16. PMC 107546 . PMID 9748443.
Fiehn, O.; Kloska S; Altmann T. Integrated studies on plant biology using multiparallel techniques.. Curr. Opin. Biotechnol. 2001, 12 (1): 82–6. PMID 11167078. doi:10.1016/S0958-1669(00)00165-8.
Fiehn, O. Combining Genomics, Metabolome Analysis, and Biochemical Modelling to Understand Metabolic Networks.. Comp. Funct. Genomics. 2001, 2 (3): 155–68. PMC 2447208 . PMID 18628911. doi:10.1002/cfg.82.
Weckwerth, W. Metabolomics in systems biology. Annu Rev Plant Biol. 2003, 54: 669–89. PMID 14503007. doi:10.1146/annurev.arplant.54.031902.135014.
Goodacre, R.; Vaidyanathan S; Dunn WB; Harrigan GG; Kell DB. Metabolomics by numbers: acquiring and understanding global metabolite data.. Trends Biotechnol. 2004, 22 (5): 245–52. PMID 15109811. doi:10.1016/j.tibtech.2004.03.007.
Wishart, DS; Tzur D; Knox C; et al. HMDB: the Human Metabolome Database. Nucleic Acids Research. January 2007, 35 (Database issue): D521–6. PMC 1899095 . PMID 17202168. doi:10.1093/nar/gkl923.
Jewison T, Neveu V, Lee J, Knox C, Liu P, Mandal R, Murthy RK, Sinelnikov I, Guo AC, Wilson M, Djoumbou Y, Wishart DS. The Yeast Metabolome Database.. Nucleic Acids Research. Jan 2012, 40 (Database issue): D815–20. PMC 3245085 . PMID 22064855. doi:10.1093/nar/gkr916.
Guo, A.; Jewison T; Wilson M; Liu Y; Knox C; Djoumbou Y; Lo P; Mandal R; Krishnamurthy R; Wishart DS. ECMDB: the E. coli Metabolome Database. Nucleic Acids Res. Jan 2013, 41 (Database issue): D625–30. PMC 3531117 . PMID 23109553. doi:10.1093/nar/gks992.
Mueller, LA; Zhang P; Rhee SY. AraCyc: a biochemical pathway database for Arabidopsis.. Plant Physiol. June 2003, 132 (2): 453–60. PMC 166988 . PMID 12805578. doi:10.1104/pp.102.017236.
Bouatra S, Aziat F, Mandal R, Guo AC, Wilson MR, Knox C, Bjorndahl TC, Krishnamurthy R, Saleem F, Liu P, Dame ZT, Poelzer J, Huynh J, Yallou FS, Psychogios N, Dong E, Bogumil R, Roehring C, Wishart DS. The human urine metabolome.. PLoS ONE. Sep 2013, 8 (9): e73076. PMC 3762851 . PMID 24023812. doi:10.1371/journal.pone.0073076.
Mandal, R; Guo AC; Chaudhary KK; Liu P; Yallou FS; Dong E; Aziat F; Wishart DS. Multi-platform characterization of the human cerebrospinal fluid metabolome: a comprehensive and quantitative update. Genome Med. Apr 2012, 4 (4): 38. PMC 3446266 . PMID 22546835. doi:10.1186/gm337.
Psychogios N, Hau DD, Peng J, Guo AC, Mandal R, Bouatra S, Sinelnikov I, Krishnamurthy R, Eisner R, Gautam B, Young N, Xia J, Knox C, Dong E, Huang P, Hollander Z, Pedersen TL, Smith SR, Bamforth F, Greiner R, McManus B, Newman JW, Goodfriend T, Wishart DS. The human serum metabolome.. PLoS ONE. Feb 2011, 6 (2): e16957. PMC 3040193 . PMID 21359215. doi:10.1371/journal.pone.0016957.
Kanehisa, M.; Goto S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 2000, 28 (1): 27–30. PMC 102409 . PMID 10592173. doi:10.1093/nar/28.1.27.
Haug K, Salek RM, Conesa P, Hastings J, de Matos P, Rijnbeek M, Mahendraker T, Williams M, Neumann S, Rocca-Serra P, Maguire E, González-Beltrán A, Sansone SA, Griffin JL, Steinbeck C. MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data. Nucleic Acids Res. 2013, 41 (Database issue): D781–6. PMC 3531110 . PMID 23109552. doi:10.1093/nar/gks1004.
Kopka, J; Schauer N; Krueger S; Birkemeyer C; Usadel B; Bergmuller E; Dormann P; Weckwerth W; Gibon Y; Stitt M; Willmitzer L; Fernie AR; Steinhauser D. GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics. 2005, 21 (8): 1635–1638. PMID 15613389. doi:10.1093/bioinformatics/bti236.
Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, Shearer AG, Zhang P, Karp PD. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. January 2010, 38 (Database issue): D473–9. PMC 2808959 . PMID 19850718. doi:10.1093/nar/gkp875.
Fahy, E.; Sud M; Cotter D; Subramaniam S. LIPID MAPS online tools for lipid research.. Nucleic Acids Res. July 2007, 35 (Web Server issue): W606–12. PMC 1933166 . PMID 17584797. doi:10.1093/nar/gkm324.
Smith, CA; I'Maille G; Want EJ; Qin C; Trauger SA; Brandon TR; Custodio DE; Abagyan R; Siuzdak G. METLIN: a metabolite mass spectral database.. Ther Drug Monit. 2005, 27 (6): 747–51. PMID 16404815. doi:10.1097/01.ftd.0000179845.53213.39.