染色体构象捕获 (Chinese Wikipedia)
Analysis of information sources in references of the Wikipedia article "染色体构象捕获" in Chinese language version.
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- Dekker J, Rippe K, Dekker M, Kleckner N. Capturing chromosome conformation. Science. 2002, 295 (5558): 1306–1311. PMID 11847345. doi:10.1126/science.1067799.
- Tolhuis B, Palstra RJ, Splinter E, Grosveld F and de Laat W. Looping and interaction between hypersensitive sites in the active beta-globin locus. Mol. Cell. 2002, 10 (6): 1453–1465. PMID 12504019. doi:10.1016/S1097-2765(02)00781-5.
- Denker, Annette; de Laat, Wouter. The second decade of 3C technologies: detailed insights into nuclear organization. Genes & Development. 23 June 2016, 30 (12): 1357–1382. PMC 4926860
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- Simonis, M., Klous, P., Splinter, E., Moshkin, Y., Willemsen, R., & de Wit, E. (2006). Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat Genet, 38. https://doi.org/10.1038/ng1896
- Dostie, J., Richmond, T. A., Arnaout, R. A., Selzer, R. R., Lee, W. L., & Honan, T. A. (2006). Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Res, 16. https://doi.org/10.1101/gr.5571506
- Lieberman-Aiden, E., van Berkum, N. L., Williams, L., Imakaev, M., Ragoczy, T., & Telling, A. (2009). Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science, 326. https://doi.org/10.1126/science.1181369
- Fullwood, M. J., Liu, M. H., Pan, Y. F., Liu, J., Xu, H., & Mohamed, Y. B. (2009). An oestrogen-receptor-alpha-bound human chromatin interactome. Nature, 462. https://doi.org/10.1038/nature08497
- Dixon, J. R., Selvaraj, S., Yue, F., Kim, A., Li, Y., Shen, Y., … Ren, B. (2012). Topological Domains in Mammalian Genomes Identified by Analysis of Chromatin Interactions. Nature, 485(7398), 376–380. http://doi.org/10.1038/nature11082
- Hagège H, Klous P, Braem C, Splinter E, Dekker J, Cathala G, de Laat W, Forné T. Quantitative analysis of chromosome conformation capture assays (3C-qPCR). Nat. Protoc. 2007, 2 (7): 1722–1733. PMID 17641637. doi:10.1038/nprot.2007.243.
- Tolhuis B, Palstra RJ, Splinter E, Grosveld F, de Laat W. Looping and interaction between hypersensitive sites in the active beta-globin locus. Mol. Cell. 2002, 10 (6): 1453–1465. PMID 12504019. doi:10.1016/S1097-2765(02)00781-5.
- Cavalli, Giacamo. Functional implications of genome topology. Nature Structural & Molecular Biology. 2013, 20 (3): 290–299 [12 June 2016]. doi:10.1038/nsmb.2474. （原始内容存档于2013-05-13）.
- Lajoie, Bryan R; van Berkum, Nynke L; Sanyal, Amartya; Dekker, Job. My5C: web tools for chromosome conformation capture studies. Nature Methods. 1 October 2009, 6 (10): 690–691. doi:10.1038/nmeth1009-690.
- Deng, Xinxian; Ma, Wenxiu; Ramani, Vijay; Hill, Andrew; Yang, Fan; Ay, Ferhat; Berletch, Joel B.; Blau, Carl Anthony; Shendure, Jay; Duan, Zhijun; Noble, William S.; Disteche, Christine M. Bipartite structure of the inactive mouse X chromosome. Genome Biology. 7 August 2015, 16 (1). doi:10.1186/s13059-015-0728-8.
- Rao, Suhas S.P.; Huntley, Miriam H.; Durand, Neva C.; Stamenova, Elena K.; Bochkov, Ivan D.; Robinson, James T.; Sanborn, Adrian L.; Machol, Ido; Omer, Arina D.; Lander, Eric S.; Aiden, Erez Lieberman. A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping. Cell. December 2014, 159 (7): 1665–1680. doi:10.1016/j.cell.2014.11.021.
- Zhou, Xin; Lowdon, Rebecca F; Li, Daofeng; Lawson, Heather A; Madden, Pamela A F; Costello, Joseph F; Wang, Ting. Exploring long-range genome interactions using the WashU Epigenome Browser. Nature Methods. 29 April 2013, 10 (5): 375–376. doi:10.1038/nmeth.2440.
- Yardımcı, Galip Gürkan; Noble, William Stafford. Software tools for visualizing Hi-C data. Genome Biology. 3 February 2017, 18 (1). doi:10.1186/s13059-017-1161-y.
- Schmitt, AD; Hu, M; Ren, B. Genome-wide mapping and analysis of chromosome architecture.. Nature Reviews Molecular Cell Biology. December 2016, 17 (12): 743–755. PMID 27580841. doi:10.1038/nrm.2016.104.
- Schmitt, AD; Hu, M; Ren, B. Genome-wide mapping and analysis of chromosome architecture.. Nature Reviews Molecular Cell Biology. December 2016, 17 (12): 743–755. PMID 27580841. doi:10.1038/nrm.2016.104.
- Dixon, Jesse R.; Selvaraj, Siddarth; Yue, Feng; Kim, Audrey; Li, Yan; Shen, Yin; Hu, Ming; Liu, Jun S.; Ren, Bing. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature. 11 April 2012, 485 (7398): 376–380. PMC 3356448 . PMID 22495300. doi:10.1038/nature11082.
- Ay, F.; Bailey, T. L.; Noble, W. S. Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts. Genome Research. 5 February 2014, 24 (6): 999–1011. PMC 4032863 . PMID 24501021. doi:10.1101/gr.160374.113.
- Imakaev, Maxim; Fudenberg, Geoffrey; McCord, Rachel Patton; Naumova, Natalia; Goloborodko, Anton; Lajoie, Bryan R; Dekker, Job; Mirny, Leonid A. Iterative correction of Hi-C data reveals hallmarks of chromosome organization. Nature Methods. 2 September 2012, 9 (10): 999–1003. PMC 3816492 . PMID 22941365. doi:10.1038/nmeth.2148.
- Ka-Chun Wong; MotifHyades: expectation maximization for de novo DNA motif pair discovery on paired sequences, Bioinformatics, Volume 33, Issue 19, 1 October 2017, Pages 3028–3035, https://doi.org/10.1093/bioinformatics/btx381
- Taberlay, P. C., Achinger-Kawecka, J., Lun, A. T. L., Buske, F. A., Sabir, K., Gould, C. M., … Clark, S. J. (2016). Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations. Genome Research, 26(6), 719–731. https://doi.org/10.1101/gr.201517.115
- Luo, Z., Rhie, S. K., Lay, F. D., & Farnham, P. J. (2017). A Prostate Cancer Risk Element Functions as a Repressive Loop that Regulates HOXA13. Cell Reports, 21(6), 1411–1417. https://doi.org/10.1016/j.celrep.2017.10.048
dx.doi.org
- MARTINS, L.A.-C.P.. Did Sutton and Boveri propose the so-called Sutton-Boveri chromosome hypothesis?. Genet. Mol. Biol. [online]. 1999, vol.22, n.2 [cited 2017-12-07], pp.261-272. Available from: <http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47571999000200022&lng=en&nrm=iso （页面存档备份，存于互联网档案馆）>. ISSN 1415-4757. http://dx.doi.org/10.1590/S1415-47571999000200022.
- Albert, I., Mavrich, T. N., Tomsho, L. P., Qi, J., Zanton, S. J., Schuster, S. C., & Pugh, B. F. (2007). Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature, 446, 572. Retrieved from http://dx.doi.org/10.1038/nature05632
- Krijger, P. H. L., & de Laat, W. (2016). Regulation of disease-associated gene expression in the 3D genome. Nat Rev Mol Cell Biol, 17(12), 771–782. Retrieved from http://dx.doi.org/10.1038/nrm.2016.138
- Bailey, S. D., Zhang, X., Desai, K., Aid, M., Corradin, O., Cowper-Sal·lari, R., … Lupien, M. (2015). ZNF143 provides sequence specificity to secure chromatin interactions at gene promoters. Nature Communications, 2, 6186. Retrieved from http://dx.doi.org/10.1038/ncomms7186
nature.com
- Cavalli, Giacamo. Functional implications of genome topology. Nature Structural & Molecular Biology. 2013, 20 (3): 290–299 [12 June 2016]. doi:10.1038/nsmb.2474. （原始内容存档于2013-05-13）.
nih.gov
ncbi.nlm.nih.gov
- Dekker J, Rippe K, Dekker M, Kleckner N. Capturing chromosome conformation. Science. 2002, 295 (5558): 1306–1311. PMID 11847345. doi:10.1126/science.1067799.
- Tolhuis B, Palstra RJ, Splinter E, Grosveld F and de Laat W. Looping and interaction between hypersensitive sites in the active beta-globin locus. Mol. Cell. 2002, 10 (6): 1453–1465. PMID 12504019. doi:10.1016/S1097-2765(02)00781-5.
- Denker, Annette; de Laat, Wouter. The second decade of 3C technologies: detailed insights into nuclear organization. Genes & Development. 23 June 2016, 30 (12): 1357–1382. PMC 4926860 . PMID 27340173. doi:10.1101/gad.281964.116.
- Hagège H, Klous P, Braem C, Splinter E, Dekker J, Cathala G, de Laat W, Forné T. Quantitative analysis of chromosome conformation capture assays (3C-qPCR). Nat. Protoc. 2007, 2 (7): 1722–1733. PMID 17641637. doi:10.1038/nprot.2007.243.
- Tolhuis B, Palstra RJ, Splinter E, Grosveld F, de Laat W. Looping and interaction between hypersensitive sites in the active beta-globin locus. Mol. Cell. 2002, 10 (6): 1453–1465. PMID 12504019. doi:10.1016/S1097-2765(02)00781-5.
- Schmitt, AD; Hu, M; Ren, B. Genome-wide mapping and analysis of chromosome architecture.. Nature Reviews Molecular Cell Biology. December 2016, 17 (12): 743–755. PMID 27580841. doi:10.1038/nrm.2016.104.
- Schmitt, AD; Hu, M; Ren, B. Genome-wide mapping and analysis of chromosome architecture.. Nature Reviews Molecular Cell Biology. December 2016, 17 (12): 743–755. PMID 27580841. doi:10.1038/nrm.2016.104.
- Dixon, Jesse R.; Selvaraj, Siddarth; Yue, Feng; Kim, Audrey; Li, Yan; Shen, Yin; Hu, Ming; Liu, Jun S.; Ren, Bing. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature. 11 April 2012, 485 (7398): 376–380. PMC 3356448 . PMID 22495300. doi:10.1038/nature11082.
- Ay, F.; Bailey, T. L.; Noble, W. S. Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts. Genome Research. 5 February 2014, 24 (6): 999–1011. PMC 4032863 . PMID 24501021. doi:10.1101/gr.160374.113.
- Imakaev, Maxim; Fudenberg, Geoffrey; McCord, Rachel Patton; Naumova, Natalia; Goloborodko, Anton; Lajoie, Bryan R; Dekker, Job; Mirny, Leonid A. Iterative correction of Hi-C data reveals hallmarks of chromosome organization. Nature Methods. 2 September 2012, 9 (10): 999–1003. PMC 3816492 . PMID 22941365. doi:10.1038/nmeth.2148.
profiles.nlm.nih.gov
scielo.br
- MARTINS, L.A.-C.P.. Did Sutton and Boveri propose the so-called Sutton-Boveri chromosome hypothesis?. Genet. Mol. Biol. [online]. 1999, vol.22, n.2 [cited 2017-12-07], pp.261-272. Available from: <http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47571999000200022&lng=en&nrm=iso （页面存档备份，存于互联网档案馆）>. ISSN 1415-4757. http://dx.doi.org/10.1590/S1415-47571999000200022.
web.archive.org
- 存档副本. [2017-12-31]. （原始内容存档于2018-04-22）.
- 存档副本. [2017-12-31]. （原始内容存档于2017-12-07）.
- MARTINS, L.A.-C.P.. Did Sutton and Boveri propose the so-called Sutton-Boveri chromosome hypothesis?. Genet. Mol. Biol. [online]. 1999, vol.22, n.2 [cited 2017-12-07], pp.261-272. Available from: <http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47571999000200022&lng=en&nrm=iso （页面存档备份，存于互联网档案馆）>. ISSN 1415-4757. http://dx.doi.org/10.1590/S1415-47571999000200022.
- 存档副本. [2017-12-31]. （原始内容存档于2018-01-29）.
- 存档副本. [2017-12-31]. （原始内容存档于2017-01-18）.
- 存档副本. [2017-12-31]. （原始内容存档于2019-09-27）.
- Cavalli, Giacamo. Functional implications of genome topology. Nature Structural & Molecular Biology. 2013, 20 (3): 290–299 [12 June 2016]. doi:10.1038/nsmb.2474. （原始内容存档于2013-05-13）.
- 存档副本. [2017-12-31]. （原始内容存档于2021-03-28）.