References analysis of the Wikipedia article "Desoxyribonukleinsäure" in the German version

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P.A. Levene: The structure of yeast nucleic acid. In: Journal of Biological Chemistry. Band 40, Nr. 2, Dezember 1919, S. 415–424, doi:10.1016/s0021-9258(18)87254-4.

O. Avery, C. MacLeod, M. McCarty: Studies on the chemical nature of the substance inducing transformation of pneumococcal types. Inductions of transformation by a desoxyribonucleic acid fraction isolated from pneumococcus type III. In: J Exp Med. Band 79, Nr. 2, 1944, S. 137–158, doi:10.1084/jem.149.2.297.

A. Hershey, M. Chase: Independent functions of viral protein and nucleic acid in growth of bacteriophage. In: J Gen Physiol. Band 36, Nr. 1, 1952, S. 39–56, doi:10.1085/jgp.36.1.39, PMID 12981234.

J. D. Watson, F. H. Crick: Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. In: Nature. Band 171, Nr. 4356, 25. April 1953, S. 737–738, doi:10.1038/171737a0, PMID 13054692.

Peter Yakovchuk, Ekaterina Protozanova, Maxim D. Frank-Kamenetskii: Base-stacking and base-pairing contributions into thermal stability of the DNA double helix. In: Nucleic Acids Research. Band 34, Nr. 2, 2006, S. 564–574. doi:10.1093/nar/gkj454 PMID 16449200

S. Kiljunen, K. Hakala, E. Pinta, S. Huttunen, P. Pluta, A. Gador, H. Lönnberg, M. Skurnik: Yersiniophage phiR1-37 is a tailed bacteriophage having a 270 kb DNA genome with thymidine replaced by deoxyuridine. In: Microbiology. 151. Jahrgang, Pt 12, Dezember 2005, S. 4093–4102, doi:10.1099/mic.0.28265-0, PMID 16339954.

J. Uchiyama, I. Takemura-Uchiyama, Y. Sakaguchi, K. Gamoh, S. Kato, M. Daibata, T. Ujihara, N. Misawa, S. Matsuzaki: Intragenus generalized transduction in Staphylococcus spp. by a novel giant phage. In: The ISME Journal. 8. Jahrgang, Nr. 9, September 2014, S. 1949–1952, doi:10.1038/ismej.2014.29, PMID 24599069, PMC 4139722 (freier Volltext).

E. Casella, O. Markewych, M. Dosmar, H. Witmer: Production and expression of dTMP-enriched DNA of bacteriophage SP15. In: Journal of Virology. Band 28, Nr. 3, Dezember 1978, S. 753–766, doi:10.1128/JVI.28.3.753-766.1978, PMID 153409.

David H. Roscoe: Synthesis of DNA in phage-infected Bacillus subtilis, in: Virology 38(4), September 1969, S. 527–537, doi:10.1016/0042-6822(69)90173-1.

M. S. Walker, M. Mandel: Biosynthesis of 5-(4'5'-dihydroxypentyl) uracil as a nucleoside triphosphate in bacteriophage SP15-infected Bacillus subtilis. In: Journal of Virology. Band 25, Nr. 2, Februar 1978, S. 500–509, doi:10.1128/JVI.25.2.500-509.1978, PMID 146749.

J. Marmurm et al.: Unique Properties of Nucleic Acid from Bacillus subtilis Phage SP-15. In: Nature New Biology, 1972, 239, S. 68. doi:10.1038/newbio239068a0 – SP-15 infiziert B. subtilis und B. licheniformis.

L Simpson: A base called J. In: Proceedings of the National Academy of Sciences of the United States of America. 95. Jahrgang, Nr. 5, März 1998, S. 2037–2038, doi:10.1073/pnas.95.5.2037, PMID 9482833, PMC 33841 (freier Volltext), bibcode:1998PNAS...95.2037S.

P Borst, R Sabatini: Base J: discovery, biosynthesis, and possible functions. In: Annual Review of Microbiology. 62. Jahrgang, 2008, S. 235–251, doi:10.1146/annurev.micro.62.081307.162750, PMID 18729733.

M Cross, R Kieft, R Sabatini, M Wilm, M de Kort, GA van der Marel, JH van Boom, F van Leeuwen, P Borst: The modified base J is the target for a novel DNA-binding protein in kinetoplastid protozoans. In: The EMBO Journal. 18. Jahrgang, Nr. 22, November 1999, S. 6573–6581, doi:10.1093/emboj/18.22.6573, PMID 10562569, PMC 1171720 (freier Volltext).

C DiPaolo, R Kieft, M Cross, R Sabatini: Regulation of trypanosome DNA glycosylation by a SWI2/SNF2-like protein. In: Molecular Cell. 17. Jahrgang, Nr. 3, Februar 2005, S. 441–451, doi:10.1016/j.molcel.2004.12.022, PMID 15694344.

S Vainio, PA Genest, B ter Riet, H van Luenen, P Borst: Evidence that J-binding protein 2 is a thymidine hydroxylase catalyzing the first step in the biosynthesis of DNA base J. In: Molecular and Biochemical Parasitology. 164. Jahrgang, Nr. 2, April 2009, S. 157–161, doi:10.1016/j.molbiopara.2008.12.001, PMID 19114062.

LM Iyer, M Tahiliani, A Rao, L Aravind: Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids. In: Cell Cycle. 8. Jahrgang, Nr. 11, Juni 2009, S. 1698–1710, doi:10.4161/cc.8.11.8580, PMID 19411852, PMC 2995806 (freier Volltext).

HG van Luenen, C Farris, S Jan, PA Genest, P Tripathi, A Velds, RM Kerkhoven, M Nieuwland, A Haydock, G Ramasamy, S Vainio, T Heidebrecht, A Perrakis, L Pagie, B van Steensel, PJ Myler, P Borst: Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania. In: Cell. 150. Jahrgang, Nr. 5, August 2012, S. 909–921, doi:10.1016/j.cell.2012.07.030, PMID 22939620, PMC 3684241 (freier Volltext).

DZ Hazelbaker, S Buratowski: Transcription: base J blocks the way. In: Current Biology. 22. Jahrgang, Nr. 22, November 2012, S. R960–2, doi:10.1016/j.cub.2012.10.010, PMID 23174300, PMC 3648658 (freier Volltext).

Han Xia et al.: Freshwater cyanophages. In: Virologica Sinica, Band 28, Nr. 5, S. 253–259, Oktober 2013, doi:10.1007/s12250-013-3370-1

R. S. Safferman, R. E. Cannon, P. R. Desjardins, B. V. Gromov, R. Haselkorn, L. A. Sherman, M. Shilo: Classification and Nomenclature of Viruses of Cyanobacteria. In: Intervirology. 19. Jahrgang, Nr. 2, 1983, S. 61–66, doi:10.1159/000149339, PMID 6408019.

Roger Hull, Fred Brown, Chris Payne (Hrsg.): Virology: A Directory and Dictionary of Animal, Bacterial and Plant Viruses, Macmillan Reference Books, ISBN 978-1-349-07947-6, doi:10.1007/978-1-349-07945-2, Treffer

JJ Thiaville, SM Kellner, Y Yuan, G Hutinet, PC Thiaville, W Jumpathong, S Mohapatra, C Brochier-Armanet, AV Letarov, R Hillebrand, CK Malik, CJ Rizzo, PC Dedon, V de Crécy-Lagard: Novel genomic island modifies DNA with 7-deazaguanine derivatives. In: Proceedings of the National Academy of Sciences of the United States of America. 113. Jahrgang, Nr. 11, 2016, S. E1452–1459, doi:10.1073/pnas.1518570113, PMID 26929322, PMC 4801273 (freier Volltext), bibcode:2016PNAS..113E1452T.

Pieter-Jan Ceyssens: The Genome and Structural Proteome of YuA, a New Pseudomonas aeruginosa Phage Resembling M6. In: Journal of Bacteriology. 190(4): S. 1429–1435, März 2008, doi:10.1128/JB.01441-07.

Tsong-teh Kuo, Tan-chi Huang, Mei-hui Teng: 5-Methylcytosine replacing cytosine in the deoxyribonucleic acid of a bacteriophage for Xanthomonas oryzae. In: Journal of Molecular Biology. 34. Jahrgang, Nr. 2, Juli 1968, S. 373–375, doi:10.1016/0022-2836(68)90263-5, PMID 5760463.

Heike Vogelsang-Wenke, Dieter Oesterhelt: Isolation of a halobacterial phage with a fully cytosine-methylated genome. In: MGG Molecular & General Genetics. 211. Jahrgang, Nr. 3, März 1988, S. 407–414, doi:10.1007/BF00425693.

Diego de Mendoza, Alberto L. Rosa: Cloning of mini-Mu bacteriophage in cosmids: in vivo packaging into phage lambda heads. In: Gene. Band 39, Nr. 1, 1985, S. 55–59, doi:10.1016/0378-1119(85)90107-6.

YJ Lee, N Dai, SE Walsh, S Müller, ME Fraser, KM Kauffman, C Guan, IR Corrêa Jr, PR Weigele: Identification and biosynthesis of thymidine hypermodifications in the genomic DNA of widespread bacterial viruses. In: Proc Natl Acad Sci USA, 3. April 2018, 115(14), S. E3116–E3125. doi:10.1073/pnas.1714812115, PMID 29555775.

H. Hayashi, K. Nakanishi, C. Brandon, J. Marmur: Structure and synthesis of dihydroxypentyluracil from bacteriophage SP-15 deoxyribonucleic acid. In: J. Am. Chem. Soc., 1973, 95, S. 8749–8757. doi:10.1021/ja00807a041.

T Carell, MQ Kurz, M Müller, M Rossa, F Spada: Non-canonical bases in the genome: The regulatory information layer in DNA. In: Angewandte Chemie (International Ed. in English). 2017, doi:10.1002/anie.201708228, PMID 28941008.

X Shu, M Liu, Z Lu, C Zhu, H Meng, S Huang, X Zhang, C Yi: Genome-wide mapping reveals that deoxyuridine is enriched in the human centromeric DNA. In: Nat Chem Biol, 2018, doi:10.1038/s41589-018-0065-9.

Kyung Hyun Lee, Kiyofumi Hamashima, Michiko Kimoto, Ichiro Hirao: Genetic alphabet expansion biotechnology by creating unnatural base pairs. In: Current Opinion in Biotechnology, Volume 51, Juni 2018, S. 8–15, ScienceDirect, ResearchGate, PMID 29049900, doi:10.1016/j.copbio

A. M. Sismour, S. Lutz, J. H. Park, M. J. Lutz, P. L. Boyer, S. H. Hughes, S. A. Benner: PCR amplification of DNA containing non-standard base pairs by variants of reverse transcriptase from Human Immunodeficiency Virus-1. In: Nucleic Acids Research. Band 32, Nummer 2, 2004, S. 728–735, doi:10.1093/nar/gkh241, PMID 14757837, PMC 373358 (freier Volltext).

Z. Yang, A. M. Sismour, P. Sheng, N. L. Puskar, S. A. Benner: Enzymatic incorporation of a third nucleobase pair. In: Nucleic Acids Research, Band 35, Nummer 13, 2007, S. 4238–4249, doi:10.1093/nar/gkm395, PMID 17576683, PMC 1934989 (freier Volltext).

S. R. Lynch, H. Liu, J. Gao, E. T. Kool: Toward a designed, functioning genetic system with expanded-size base pairs: solution structure of the eight-base xDNA double helix. In: Journal of the American Chemical Society, Band 128, Nr. 45, November 2006, S. 14704–14711, doi:10.1021/ja065606n. PMID 17090058. PMC 2519095 (freier Volltext).

Yorke Zhang, Brian M. Lamb, Aaron W. Feldman, Anne Xiaozhou Zhou, Thomas Lavergne, Lingjun Li, Floyd E. Romesberg: A semisynthetic organism engineered for the stable expansion of the genetic alphabet. In: PNAS, 114 (6), 7. Februar 2017, S. 1317–1322; first published January 23, 2017, doi:10.1073/pnas.1616443114, Hrsg.: Clyde A. Hutchison III, The J. Craig Venter Institute

Indu Negi, Preetleen Kathuria, Purshotam Sharma, Stacey D. Wetmore: How do hydrophobic nucleobases differ from natural DNA nucleobases? Comparison of structural features and duplex properties from QM calculations and MD simulations. In: Phys. Chem. Chem. Phys., 2017, 19, S. 16305–16374, doi:10.1039/C7CP02576A.

Shuichi Hoshika, Nicole A. Leal, Myong-Jung Kim, Myong-Sang Kim, Nilesh B. Karalkar, Hyo-Joong Kim, Alison M. Bates, Norman E. Watkins Jr., Holly A. SantaLucia, Adam J. Meyer, Saurja DasGupta, Joseph A. Piccirilli, Andrew D. Ellington, John SantaLucia Jr., Millie M. Georgiadis, Steven A. Benner: Hachimoji DNA and RNA: A genetic system with eight building blocks. In: Science, 363 (6429), 22. Februar 2019, S. 884–887, doi:10.1126/science.aat0971.

W. Purschke, F. Radtke, F. Kleinjung, S. Klussmann: A DNA Spiegelmer to staphylococcal enterotoxin B. In: Nucleic Acids Research. Band 31, Nr. 12, 2003, S. 3027–3032. doi:10.1093/nar/gkg413, PMID 12799428.

Gosuke Hayashi, Masaki Hagihara, Kazuhiko Nakatani: Application of L-DNA as a molecular tag. In: Nucleic Acids Symposium Series, Band 49, Nr. 1, 2005, S. 261–262. doi:10.1093/nass/49.1.261, PMID 17150733.

François Sicard, Nicolas Destainville, Manoel Manghi: DNA denaturation bubbles: Free-energy landscape and nucleation/closure rates. In: The Journal of Chemical Physics. 142. Jahrgang, Nr. 3, 21. Januar 2015, S. 034903, doi:10.1063/1.4905668, arxiv:1405.3867.

C. Richard, A. J. Guttmann: Poland–Scheraga Models and the DNA Denaturation Transition. In: Journal of Statistical Physics. 115, 2004, S. 925, doi:10.1023/B:JOSS.0000022370.48118.8b.

Grégoire Altan-Bonnet, Albert Libchaber, Oleg Krichevsky: Bubble Dynamics in Double-Stranded DNA. In: Physical Review Letters. 90. Jahrgang, Nr. 13, 1. April 2003, doi:10.1103/physrevlett.90.138101.

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Wolfgang Hennig: Genetik. Springer-Verlag, 2013, ISBN 978-3-662-07430-5 (eingeschränkte Vorschau in der Google-Buchsuche).

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A. Hershey, M. Chase: Independent functions of viral protein and nucleic acid in growth of bacteriophage. In: J Gen Physiol. Band 36, Nr. 1, 1952, S. 39–56, doi:10.1085/jgp.36.1.39, PMID 12981234.

R. Wing, H. Drew, T. Takano, C. Broka, S. Tanaka, K. Itakura, R. Dickerson: Crystal structure analysis of a complete turn of B-DNA. In: Nature. Band 287, Nr. 5784, 1980, S. 755–758, PMID 7432492.

C. Pabo, R. Sauer: Protein-DNA recognition. In: Annu Rev Biochem. Band 53, S. 293–321, PMID 6236744.

S. C. Ha, K. Lowenhaupt, A. Rich, Y. G. Kim, K. K. Kim: Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases. In: Nature. Band 437, 2005, S. 1183–1186, PMID 16237447.

Andrew M. Kropinski et al.: The Sequence of Two Bacteriophages with Hypermodified Bases Reveals Novel Phage-Host Interactions. In: Viruses, Mai 2018, 10(5), S. 217. PMC 5977210 (freier Volltext), PMID 29695085, PMC 5977210 (freier Volltext).

NCBI: Cyanophage S-2L (species)

IY Khudyakov, MD Kirnos, NI Alexandrushkina, BF Vanyushin: Cyanophage S-2L contains DNA with 2,6-diaminopurine substituted for adenine. In: Virology. 88. Jahrgang, Nr. 1, 1978, S. 8–18, PMID 676082.

NCBI: Acinetobacter phage SH-Ab 15497 (species)

NCBI: Enterobacteria phage 9g (no rank)

GR Wyatt, SS Cohen: The bases of the nucleic acids of some bacterial and animal viruses: the occurrence of 5-hydroxymethylcytosine. In: The Biochemical Journal. 55. Jahrgang, Nr. 5, 1953, S. 774–782, PMID 13115372, PMC 1269533 (freier Volltext).

DB Dunn, JD Smith: Occurrence of a new base in the deoxyribonucleic acid of a strain of Bacterium coli. In: Nature. 175. Jahrgang, Nr. 4451, 1955, S. 336–337, PMID 13235889.

E Bremer et al.: Lambda placMu: a transposable derivative of bacteriophage lambda for creating lacZ protein fusions in a single step. In: J Bacteriol. Band 158, Nr. 3, Juni 1984, S. 1084–1093, PMC 215554 (freier Volltext), PMID 6327627

B. Allet, A. I. Bukhari: Analysis of bacteriophage mu and lambda-mu hybrid DNAs by specific endonucleases. In: Journal of Molecular Biology. 92. Jahrgang, Nr. 4, 1975, S. 529–540, PMID 1097703.

II Nikolskaya, NG Lopatina, SS Debov: Methylated guanine derivative as a minor base in the DNA of phage DDVI Shigella disenteriae. In: Biochimica et Biophysica Acta. 435. Jahrgang, Nr. 2, 1976, S. 206–210, PMID 779843.

A Janulaitis, S Klimasauskas, M Petrusyte, V Butkus: Cytosine modification in DNA by BcnI methylase yields N4-methylcytosine. In: FEBS Letters. 161. Jahrgang, Nr. 1, 1983, S. 131–134, PMID 6884523.

D Swinton, S Hattman, R Benzinger, V Buchanan-Wollaston, J Beringer: Replacement of the deoxycytidine residues in Rhizobium bacteriophage RL38JI DNA. In: FEBS Letters. 184. Jahrgang, Nr. 2, 1985, S. 294–298, PMID 2987032.

KL Maltman, J Neuhard, RA Warren: 5-[(Hydroxymethyl)-O-pyrophosphoryl]uracil, an intermediate in the biosynthesis of alpha-putrescinylthymine in deoxyribonucleic acid of bacteriophage phi W-14. In: Biochemistry. 20. Jahrgang, Nr. 12, 1981, S. 3586–3591, PMID 7260058.

Z. Yang, D. Hutter, P. Sheng, A. M. Sismour und S. A. Benner: Artificially expanded genetic information system: a new base pair with an alternative hydrogen bonding pattern. In: Nucleic Acids Res., 34, 2006, S. 6095–6101. PMC 1635279 (freier Volltext)

J. Marmur, P. O. Ts'O: Denaturation of deoxyribonucleic acid by formamide. In: Biochimica et Biophysica Acta. Band 51, Juli 1961, S. 32–36, PMID 13767022.

web.archive.org

ICTV: dsDNA Viruses > Myoviridae (Memento vom 26. Dezember 2018 im Internet Archive), in: ICTV 9th Report (2011)

M. H. V. van Regenmortel et al.: ICTV 7th Report (Memento vom 24. Februar 2021 im Internet Archive) (PDF; 857 kB) 2000

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Moritz Aisslinger: Sie war’s. Untertitel: Anfang der Fünfzigerjahre: Die Forscherin Rosalind Franklin kommt dem Geheimnis des Lebens ganz nahe. Doch drei Männer betrügen sie um den Lohn ihrer Arbeit – und erhalten den Nobelpreis. In: Die Zeit Nr. 42 vom 13. Oktober 2022, S. 15–17 (Mit Aktualisierungen in der online-Version am 16.10. Komplettansicht des Artikels hinter der Bezahlschranke.). In der Artikel-Reihe: Sternstunden der Menschheit. (Mit 2 Fotos von ihr aus den 1950ern und einer Kopie des photo 51 von 2. Mai 1952)

Desoxyribonukleinsäure (German Wikipedia)

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