Gene regulatory network (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Gene regulatory network" in English language version.

refsWebsite

Global rank English rank

64nih.gov

4^th place

46doi.org

2^nd place

22harvard.edu

18^th place

17^th place

16semanticscholar.org

11^th place

8^th place

5psu.edu

207^th place

136^th place

2kent.ac.uk

6,512^th place

4,000^th place

1web.archive.org

1^st place

1herts.ac.uk

low place

1panmental.de

low place

1caltech.edu

887^th place

714^th place

1arxiv.org

69^th place

59^th place

1columbia.edu

488^th place

374^th place

1byu.edu

1,687^th place

1,074^th place

arxiv.org (Global: 69^th place; English: 59^th place)

Zabet NR (September 2011). "Negative feedback and physical limits of genes". Journal of Theoretical Biology. 284 (1): 82–91. arXiv:1408.1869. Bibcode:2011JThBi.284...82Z. doi:10.1016/j.jtbi.2011.06.021. PMID 21723295. S2CID 14274912.

byu.edu (Global: 1,687^th place; English: 1,074^th place)

axon.cs.byu.edu

Smith MR, Clement M, Martinez T, Snell Q (2010). "Time Series Gene Expression Prediction using Neural Networks with Hidden Layers" (PDF). Proceedings of the 7th Biotechnology and Bioinformatics Symposium (BIOT 2010). pp. 67–69.

caltech.edu (Global: 887^th place; English: 714^th place)

authors.library.caltech.edu

Elowitz MB, Levine AJ, Siggia ED, Swain PS (August 2002). "Stochastic gene expression in a single cell" (PDF). Science. 297 (5584): 1183–1186. Bibcode:2002Sci...297.1183E. doi:10.1126/science.1070919. PMID 12183631. S2CID 10845628.

columbia.edu (Global: 488^th place; English: 374^th place)

wiki.c2b2.columbia.edu

"The DREAM Project". Columbia University Center for Multiscale Analysis Genomic and Cellular Networks (MAGNet).

doi.org (Global: 2^nd place; English: 2^nd place)

Latchman DS (September 1996). "Inhibitory transcription factors". The International Journal of Biochemistry & Cell Biology. 28 (9): 965–974. doi:10.1016/1357-2725(96)00039-8. PMID 8930119.
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, et al. (October 2002). "Transcriptional regulatory networks in Saccharomyces cerevisiae". Science. 298 (5594). Young Lab: 799–804. Bibcode:2002Sci...298..799L. doi:10.1126/science.1075090. PMID 12399584. S2CID 4841222.
Davidson E, Levin M (April 2005). "Gene regulatory networks". Proceedings of the National Academy of Sciences of the United States of America. 102 (14): 4935. Bibcode:2005PNAS..102.4935D. doi:10.1073/pnas.0502024102. PMC 556010. PMID 15809445.
Azpeitia E, Muñoz S, González-Tokman D, Martínez-Sánchez ME, Weinstein N, Naldi A, et al. (February 2017). "The combination of the functionalities of feedback circuits is determinant for the attractors' number and size in pathway-like Boolean networks". Scientific Reports. 7 42023. Bibcode:2017NatSR...742023A. doi:10.1038/srep42023. PMC 5301197. PMID 28186191.
Banf M, Rhee SY (January 2017). "Computational inference of gene regulatory networks: Approaches, limitations and opportunities". Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. 1860 (1): 41–52. doi:10.1016/j.bbagrm.2016.09.003. PMID 27641093.
Kumar V, Muratani M, Rayan NA, Kraus P, Lufkin T, Ng HH, Prabhakar S (July 2013). "Uniform, optimal signal processing of mapped deep-sequencing data". Nature Biotechnology. 31 (7): 615–622. doi:10.1038/nbt.2596. PMID 23770639.
Barabási AL, Oltvai ZN (February 2004). "Network biology: understanding the cell's functional organization". Nature Reviews. Genetics. 5 (2): 101–113. doi:10.1038/nrg1272. PMID 14735121. S2CID 10950726.
Wagner GP, Zhang J (March 2011). "The pleiotropic structure of the genotype-phenotype map: the evolvability of complex organisms". Nature Reviews. Genetics. 12 (3): 204–213. doi:10.1038/nrg2949. PMID 21331091. S2CID 8612268.
Leclerc RD (August 2008). "Survival of the sparsest: robust gene networks are parsimonious". Molecular Systems Biology. 4 (1): 213. doi:10.1038/msb.2008.52. PMC 2538912. PMID 18682703.
Jukam D, Xie B, Rister J, Terrell D, Charlton-Perkins M, Pistillo D, et al. (October 2013). "Opposite feedbacks in the Hippo pathway for growth control and neural fate". Science. 342 (6155) 1238016. doi:10.1126/science.1238016. PMC 3796000. PMID 23989952.
Hoyos E, Kim K, Milloz J, Barkoulas M, Pénigault JB, Munro E, Félix MA (April 2011). "Quantitative variation in autocrine signaling and pathway crosstalk in the Caenorhabditis vulval network". Current Biology. 21 (7): 527–538. Bibcode:2011CBio...21..527H. doi:10.1016/j.cub.2011.02.040. PMC 3084603. PMID 21458263.
Shen-Orr SS, Milo R, Mangan S, Alon U (May 2002). "Network motifs in the transcriptional regulation network of Escherichia coli". Nature Genetics. 31 (1): 64–68. doi:10.1038/ng881. PMID 11967538. S2CID 2180121.
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, et al. (October 2002). "Transcriptional regulatory networks in Saccharomyces cerevisiae". Science. 298 (5594): 799–804. Bibcode:2002Sci...298..799L. doi:10.1126/science.1075090. PMID 12399584. S2CID 4841222.
Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, et al. (August 2014). "Comparative analysis of regulatory information and circuits across distant species". Nature. 512 (7515): 453–456. Bibcode:2014Natur.512..453B. doi:10.1038/nature13668. PMC 4336544. PMID 25164757.
Conant GC, Wagner A (July 2003). "Convergent evolution of gene circuits". Nature Genetics. 34 (3): 264–266. doi:10.1038/ng1181. PMID 12819781. S2CID 959172.
Mangan S, Alon U (October 2003). "Structure and function of the feed-forward loop network motif". Proceedings of the National Academy of Sciences of the United States of America. 100 (21): 11980–11985. Bibcode:2003PNAS..10011980M. doi:10.1073/pnas.2133841100. PMC 218699. PMID 14530388.
Goentoro L, Shoval O, Kirschner MW, Alon U (December 2009). "The incoherent feedforward loop can provide fold-change detection in gene regulation". Molecular Cell. 36 (5): 894–899. doi:10.1016/j.molcel.2009.11.018. PMC 2896310. PMID 20005851.
Mangan S, Itzkovitz S, Zaslaver A, Alon U (March 2006). "The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli". Journal of Molecular Biology. 356 (5): 1073–1081. CiteSeerX 10.1.1.184.8360. doi:10.1016/j.jmb.2005.12.003. PMID 16406067.
Mangan S, Zaslaver A, Alon U (November 2003). "The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks". Journal of Molecular Biology. 334 (2): 197–204. CiteSeerX 10.1.1.110.4629. doi:10.1016/j.jmb.2003.09.049. PMID 14607112.
Goentoro L, Kirschner MW (December 2009). "Evidence that fold-change, and not absolute level, of beta-catenin dictates Wnt signaling". Molecular Cell. 36 (5): 872–884. doi:10.1016/j.molcel.2009.11.017. PMC 2921914. PMID 20005849.
Kvitek DJ, Sherlock G (November 2013). "Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment". PLOS Genetics. 9 (11) e1003972. doi:10.1371/journal.pgen.1003972. PMC 3836717. PMID 24278038.
Lynch M (October 2007). "The evolution of genetic networks by non-adaptive processes". Nature Reviews. Genetics. 8 (10): 803–813. doi:10.1038/nrg2192. PMID 17878896. S2CID 11839414.
Cordero OX, Hogeweg P (October 2006). "Feed-forward loop circuits as a side effect of genome evolution". Molecular Biology and Evolution. 23 (10): 1931–1936. doi:10.1093/molbev/msl060. PMID 16840361.
Xiong K, Lancaster AK, Siegal ML, Masel J (June 2019). "Feed-forward regulation adaptively evolves via dynamics rather than topology when there is intrinsic noise". Nature Communications. 10 (1): 2418. Bibcode:2019NatCo..10.2418X. doi:10.1038/s41467-019-10388-6. PMC 6546794. PMID 31160574.
Almeida BL, Bahrudeen MN, Chauhan V, Dash S, Kandavalli V, Häkkinen A, et al. (June 2022). "The transcription factor network of E. coli steers global responses to shifts in RNAP concentration". Nucleic Acids Research. 50 (12): 6801–6819. doi:10.1093/nar/gkac540. PMC 9262627. PMID 35748858.
Chu D, Zabet NR, Mitavskiy B (April 2009). "Models of transcription factor binding: sensitivity of activation functions to model assumptions" (PDF). Journal of Theoretical Biology. 257 (3): 419–429. Bibcode:2009JThBi.257..419C. doi:10.1016/j.jtbi.2008.11.026. PMID 19121637. S2CID 12809260.
Kauffman SA (March 1969). "Metabolic stability and epigenesis in randomly constructed genetic nets". Journal of Theoretical Biology. 22 (3): 437–467. Bibcode:1969JThBi..22..437K. doi:10.1016/0022-5193(69)90015-0. PMID 5803332.
Lovrics A, Gao Y, Juhász B, Bock I, Byrne HM, Dinnyés A, Kovács KA (November 2014). "Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord". PLOS ONE. 9 (11) e111430. Bibcode:2014PLoSO...9k1430L. doi:10.1371/journal.pone.0111430. PMC 4232242. PMID 25398016.
Vohradsky J (September 2001). "Neural model of the genetic network". The Journal of Biological Chemistry. 276 (39): 36168–36173. doi:10.1074/jbc.M104391200. PMID 11395518.
Geard N, Wiles J (2005). "A gene network model for developing cell lineages". Artificial Life. 11 (3): 249–267. CiteSeerX 10.1.1.1.4742. doi:10.1162/1064546054407202. PMID 16053570. S2CID 8664677.
Elowitz MB, Levine AJ, Siggia ED, Swain PS (August 2002). "Stochastic gene expression in a single cell" (PDF). Science. 297 (5584): 1183–1186. Bibcode:2002Sci...297.1183E. doi:10.1126/science.1070919. PMID 12183631. S2CID 10845628.
Blake WJ, KAErn M, Cantor CR, Collins JJ (April 2003). "Noise in eukaryotic gene expression". Nature. 422 (6932): 633–637. Bibcode:2003Natur.422..633B. doi:10.1038/nature01546. PMID 12687005. S2CID 4347106.
Arkin A, Ross J, McAdams HH (August 1998). "Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells". Genetics. 149 (4): 1633–1648. doi:10.1093/genetics/149.4.1633. PMC 1460268. PMID 9691025.
Raser JM, O'Shea EK (September 2005). "Noise in gene expression: origins, consequences, and control". Science. 309 (5743): 2010–2013. Bibcode:2005Sci...309.2010R. doi:10.1126/science.1105891. PMC 1360161. PMID 16179466.
Elowitz MB, Leibler S (January 2000). "A synthetic oscillatory network of transcriptional regulators". Nature. 403 (6767): 335–338. Bibcode:2000Natur.403..335E. doi:10.1038/35002125. PMID 10659856. S2CID 41632754.
Gardner TS, Cantor CR, Collins JJ (January 2000). "Construction of a genetic toggle switch in Escherichia coli". Nature. 403 (6767): 339–342. Bibcode:2000Natur.403..339G. doi:10.1038/35002131. PMID 10659857. S2CID 345059.
Gillespie DT (1976). "A general method for numerically simulating the stochastic time evolution of coupled chemical reactions". J. Comput. Phys. 22 (4): 403–34. Bibcode:1976JCoPh..22..403G. doi:10.1016/0021-9991(76)90041-3.
Roussel MR, Zhu R (December 2006). "Validation of an algorithm for delay stochastic simulation of transcription and translation in prokaryotic gene expression". Physical Biology. 3 (4): 274–284. Bibcode:2006PhBio...3..274R. doi:10.1088/1478-3975/3/4/005. PMID 17200603. S2CID 21456299.
Ribeiro A, Zhu R, Kauffman SA (November 2006). "A general modeling strategy for gene regulatory networks with stochastic dynamics". Journal of Computational Biology. 13 (9): 1630–1639. doi:10.1089/cmb.2006.13.1630. PMID 17147485. S2CID 6629364.
Zabet NR, Chu DF (June 2010). "Computational limits to binary genes". Journal of the Royal Society, Interface. 7 (47): 945–954. doi:10.1098/rsif.2009.0474. PMC 2871807. PMID 20007173.
Chu DF, Zabet NR, Hone AN (May–June 2011). "Optimal parameter settings for information processing in gene regulatory networks" (PDF). Bio Systems. 104 (2–3): 99–108. Bibcode:2011BiSys.104...99C. doi:10.1016/j.biosystems.2011.01.006. PMID 21256918.
Zabet NR (September 2011). "Negative feedback and physical limits of genes". Journal of Theoretical Biology. 284 (1): 82–91. arXiv:1408.1869. Bibcode:2011JThBi.284...82Z. doi:10.1016/j.jtbi.2011.06.021. PMID 21723295. S2CID 14274912.
Ribeiro AS, Lloyd-Price J (March 2007). "SGN Sim, a stochastic genetic networks simulator". Bioinformatics. 23 (6): 777–779. doi:10.1093/bioinformatics/btm004. PMID 17267430.
Kaznessis YN (November 2007). "Models for synthetic biology". BMC Systems Biology. 1: 47. doi:10.1186/1752-0509-1-47. PMC 2194732. PMID 17986347.
Gustafsson M, Hörnquist M (February 2010). "Gene expression prediction by soft integration and the elastic net-best performance of the DREAM3 gene expression challenge". PLOS ONE. 5 (2) e9134. Bibcode:2010PLoSO...5.9134G. doi:10.1371/journal.pone.0009134. PMC 2821917. PMID 20169069.
Gnanakkumaar P, Murugesan R, Ahmed SS (September 2019). "Gene Regulatory Networks in Peripheral Mononuclear Cells Reveals Critical Regulatory Modules and Regulators of Multiple Sclerosis". Scientific Reports. 9 (1): 12732. Bibcode:2019NatSR...912732G. doi:10.1038/s41598-019-49124-x. PMC 6726613. PMID 31484947.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, et al. (October 2002). "Transcriptional regulatory networks in Saccharomyces cerevisiae". Science. 298 (5594). Young Lab: 799–804. Bibcode:2002Sci...298..799L. doi:10.1126/science.1075090. PMID 12399584. S2CID 4841222.
Davidson E, Levin M (April 2005). "Gene regulatory networks". Proceedings of the National Academy of Sciences of the United States of America. 102 (14): 4935. Bibcode:2005PNAS..102.4935D. doi:10.1073/pnas.0502024102. PMC 556010. PMID 15809445.
Azpeitia E, Muñoz S, González-Tokman D, Martínez-Sánchez ME, Weinstein N, Naldi A, et al. (February 2017). "The combination of the functionalities of feedback circuits is determinant for the attractors' number and size in pathway-like Boolean networks". Scientific Reports. 7 42023. Bibcode:2017NatSR...742023A. doi:10.1038/srep42023. PMC 5301197. PMID 28186191.
Hoyos E, Kim K, Milloz J, Barkoulas M, Pénigault JB, Munro E, Félix MA (April 2011). "Quantitative variation in autocrine signaling and pathway crosstalk in the Caenorhabditis vulval network". Current Biology. 21 (7): 527–538. Bibcode:2011CBio...21..527H. doi:10.1016/j.cub.2011.02.040. PMC 3084603. PMID 21458263.
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, et al. (October 2002). "Transcriptional regulatory networks in Saccharomyces cerevisiae". Science. 298 (5594): 799–804. Bibcode:2002Sci...298..799L. doi:10.1126/science.1075090. PMID 12399584. S2CID 4841222.
Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, et al. (August 2014). "Comparative analysis of regulatory information and circuits across distant species". Nature. 512 (7515): 453–456. Bibcode:2014Natur.512..453B. doi:10.1038/nature13668. PMC 4336544. PMID 25164757.
Mangan S, Alon U (October 2003). "Structure and function of the feed-forward loop network motif". Proceedings of the National Academy of Sciences of the United States of America. 100 (21): 11980–11985. Bibcode:2003PNAS..10011980M. doi:10.1073/pnas.2133841100. PMC 218699. PMID 14530388.
Xiong K, Lancaster AK, Siegal ML, Masel J (June 2019). "Feed-forward regulation adaptively evolves via dynamics rather than topology when there is intrinsic noise". Nature Communications. 10 (1): 2418. Bibcode:2019NatCo..10.2418X. doi:10.1038/s41467-019-10388-6. PMC 6546794. PMID 31160574.
Chu D, Zabet NR, Mitavskiy B (April 2009). "Models of transcription factor binding: sensitivity of activation functions to model assumptions" (PDF). Journal of Theoretical Biology. 257 (3): 419–429. Bibcode:2009JThBi.257..419C. doi:10.1016/j.jtbi.2008.11.026. PMID 19121637. S2CID 12809260.
Kauffman SA (March 1969). "Metabolic stability and epigenesis in randomly constructed genetic nets". Journal of Theoretical Biology. 22 (3): 437–467. Bibcode:1969JThBi..22..437K. doi:10.1016/0022-5193(69)90015-0. PMID 5803332.
Lovrics A, Gao Y, Juhász B, Bock I, Byrne HM, Dinnyés A, Kovács KA (November 2014). "Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord". PLOS ONE. 9 (11) e111430. Bibcode:2014PLoSO...9k1430L. doi:10.1371/journal.pone.0111430. PMC 4232242. PMID 25398016.
Elowitz MB, Levine AJ, Siggia ED, Swain PS (August 2002). "Stochastic gene expression in a single cell" (PDF). Science. 297 (5584): 1183–1186. Bibcode:2002Sci...297.1183E. doi:10.1126/science.1070919. PMID 12183631. S2CID 10845628.
Blake WJ, KAErn M, Cantor CR, Collins JJ (April 2003). "Noise in eukaryotic gene expression". Nature. 422 (6932): 633–637. Bibcode:2003Natur.422..633B. doi:10.1038/nature01546. PMID 12687005. S2CID 4347106.
Raser JM, O'Shea EK (September 2005). "Noise in gene expression: origins, consequences, and control". Science. 309 (5743): 2010–2013. Bibcode:2005Sci...309.2010R. doi:10.1126/science.1105891. PMC 1360161. PMID 16179466.
Elowitz MB, Leibler S (January 2000). "A synthetic oscillatory network of transcriptional regulators". Nature. 403 (6767): 335–338. Bibcode:2000Natur.403..335E. doi:10.1038/35002125. PMID 10659856. S2CID 41632754.
Gardner TS, Cantor CR, Collins JJ (January 2000). "Construction of a genetic toggle switch in Escherichia coli". Nature. 403 (6767): 339–342. Bibcode:2000Natur.403..339G. doi:10.1038/35002131. PMID 10659857. S2CID 345059.
Gillespie DT (1976). "A general method for numerically simulating the stochastic time evolution of coupled chemical reactions". J. Comput. Phys. 22 (4): 403–34. Bibcode:1976JCoPh..22..403G. doi:10.1016/0021-9991(76)90041-3.
Roussel MR, Zhu R (December 2006). "Validation of an algorithm for delay stochastic simulation of transcription and translation in prokaryotic gene expression". Physical Biology. 3 (4): 274–284. Bibcode:2006PhBio...3..274R. doi:10.1088/1478-3975/3/4/005. PMID 17200603. S2CID 21456299.
Chu DF, Zabet NR, Hone AN (May–June 2011). "Optimal parameter settings for information processing in gene regulatory networks" (PDF). Bio Systems. 104 (2–3): 99–108. Bibcode:2011BiSys.104...99C. doi:10.1016/j.biosystems.2011.01.006. PMID 21256918.
Zabet NR (September 2011). "Negative feedback and physical limits of genes". Journal of Theoretical Biology. 284 (1): 82–91. arXiv:1408.1869. Bibcode:2011JThBi.284...82Z. doi:10.1016/j.jtbi.2011.06.021. PMID 21723295. S2CID 14274912.
Gustafsson M, Hörnquist M (February 2010). "Gene expression prediction by soft integration and the elastic net-best performance of the DREAM3 gene expression challenge". PLOS ONE. 5 (2) e9134. Bibcode:2010PLoSO...5.9134G. doi:10.1371/journal.pone.0009134. PMC 2821917. PMID 20169069.
Gnanakkumaar P, Murugesan R, Ahmed SS (September 2019). "Gene Regulatory Networks in Peripheral Mononuclear Cells Reveals Critical Regulatory Modules and Regulators of Multiple Sclerosis". Scientific Reports. 9 (1): 12732. Bibcode:2019NatSR...912732G. doi:10.1038/s41598-019-49124-x. PMC 6726613. PMID 31484947.

herts.ac.uk (Global: low place; English: low place)

strc.herts.ac.uk

Schilstra MJ, Bolouri H (2 January 2002). "Modelling the Regulation of Gene Expression in Genetic Regulatory Networks". Biocomputation group, University of Hertfordshire. Archived from the original on 13 October 2007.

kent.ac.uk (Global: 6,512^th place; English: 4,000^th place)

kar.kent.ac.uk

Chu D, Zabet NR, Mitavskiy B (April 2009). "Models of transcription factor binding: sensitivity of activation functions to model assumptions" (PDF). Journal of Theoretical Biology. 257 (3): 419–429. Bibcode:2009JThBi.257..419C. doi:10.1016/j.jtbi.2008.11.026. PMID 19121637. S2CID 12809260.
Chu DF, Zabet NR, Hone AN (May–June 2011). "Optimal parameter settings for information processing in gene regulatory networks" (PDF). Bio Systems. 104 (2–3): 99–108. Bibcode:2011BiSys.104...99C. doi:10.1016/j.biosystems.2011.01.006. PMID 21256918.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Latchman DS (September 1996). "Inhibitory transcription factors". The International Journal of Biochemistry & Cell Biology. 28 (9): 965–974. doi:10.1016/1357-2725(96)00039-8. PMID 8930119.
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, et al. (October 2002). "Transcriptional regulatory networks in Saccharomyces cerevisiae". Science. 298 (5594). Young Lab: 799–804. Bibcode:2002Sci...298..799L. doi:10.1126/science.1075090. PMID 12399584. S2CID 4841222.
Davidson E, Levin M (April 2005). "Gene regulatory networks". Proceedings of the National Academy of Sciences of the United States of America. 102 (14): 4935. Bibcode:2005PNAS..102.4935D. doi:10.1073/pnas.0502024102. PMC 556010. PMID 15809445.
Azpeitia E, Muñoz S, González-Tokman D, Martínez-Sánchez ME, Weinstein N, Naldi A, et al. (February 2017). "The combination of the functionalities of feedback circuits is determinant for the attractors' number and size in pathway-like Boolean networks". Scientific Reports. 7 42023. Bibcode:2017NatSR...742023A. doi:10.1038/srep42023. PMC 5301197. PMID 28186191.
Banf M, Rhee SY (January 2017). "Computational inference of gene regulatory networks: Approaches, limitations and opportunities". Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. 1860 (1): 41–52. doi:10.1016/j.bbagrm.2016.09.003. PMID 27641093.
Kumar V, Muratani M, Rayan NA, Kraus P, Lufkin T, Ng HH, Prabhakar S (July 2013). "Uniform, optimal signal processing of mapped deep-sequencing data". Nature Biotechnology. 31 (7): 615–622. doi:10.1038/nbt.2596. PMID 23770639.
Barabási AL, Oltvai ZN (February 2004). "Network biology: understanding the cell's functional organization". Nature Reviews. Genetics. 5 (2): 101–113. doi:10.1038/nrg1272. PMID 14735121. S2CID 10950726.
Wagner GP, Zhang J (March 2011). "The pleiotropic structure of the genotype-phenotype map: the evolvability of complex organisms". Nature Reviews. Genetics. 12 (3): 204–213. doi:10.1038/nrg2949. PMID 21331091. S2CID 8612268.
Leclerc RD (August 2008). "Survival of the sparsest: robust gene networks are parsimonious". Molecular Systems Biology. 4 (1): 213. doi:10.1038/msb.2008.52. PMC 2538912. PMID 18682703.
Jukam D, Xie B, Rister J, Terrell D, Charlton-Perkins M, Pistillo D, et al. (October 2013). "Opposite feedbacks in the Hippo pathway for growth control and neural fate". Science. 342 (6155) 1238016. doi:10.1126/science.1238016. PMC 3796000. PMID 23989952.
Hoyos E, Kim K, Milloz J, Barkoulas M, Pénigault JB, Munro E, Félix MA (April 2011). "Quantitative variation in autocrine signaling and pathway crosstalk in the Caenorhabditis vulval network". Current Biology. 21 (7): 527–538. Bibcode:2011CBio...21..527H. doi:10.1016/j.cub.2011.02.040. PMC 3084603. PMID 21458263.
Shen-Orr SS, Milo R, Mangan S, Alon U (May 2002). "Network motifs in the transcriptional regulation network of Escherichia coli". Nature Genetics. 31 (1): 64–68. doi:10.1038/ng881. PMID 11967538. S2CID 2180121.
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, et al. (October 2002). "Transcriptional regulatory networks in Saccharomyces cerevisiae". Science. 298 (5594): 799–804. Bibcode:2002Sci...298..799L. doi:10.1126/science.1075090. PMID 12399584. S2CID 4841222.
Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, et al. (August 2014). "Comparative analysis of regulatory information and circuits across distant species". Nature. 512 (7515): 453–456. Bibcode:2014Natur.512..453B. doi:10.1038/nature13668. PMC 4336544. PMID 25164757.
Conant GC, Wagner A (July 2003). "Convergent evolution of gene circuits". Nature Genetics. 34 (3): 264–266. doi:10.1038/ng1181. PMID 12819781. S2CID 959172.
Mangan S, Alon U (October 2003). "Structure and function of the feed-forward loop network motif". Proceedings of the National Academy of Sciences of the United States of America. 100 (21): 11980–11985. Bibcode:2003PNAS..10011980M. doi:10.1073/pnas.2133841100. PMC 218699. PMID 14530388.
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ncbi.nlm.nih.gov

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panmental.de (Global: low place; English: low place)

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psu.edu (Global: 207^th place; English: 136^th place)

citeseerx.ist.psu.edu

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semanticscholar.org (Global: 11^th place; English: 8^th place)

api.semanticscholar.org

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Conant GC, Wagner A (July 2003). "Convergent evolution of gene circuits". Nature Genetics. 34 (3): 264–266. doi:10.1038/ng1181. PMID 12819781. S2CID 959172.
Lynch M (October 2007). "The evolution of genetic networks by non-adaptive processes". Nature Reviews. Genetics. 8 (10): 803–813. doi:10.1038/nrg2192. PMID 17878896. S2CID 11839414.
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web.archive.org (Global: 1^st place; English: 1^st place)

Schilstra MJ, Bolouri H (2 January 2002). "Modelling the Regulation of Gene Expression in Genetic Regulatory Networks". Biocomputation group, University of Hertfordshire. Archived from the original on 13 October 2007.

Gene regulatory network (English Wikipedia)

arxiv.org (Global: 69th place; English: 59th place)

byu.edu (Global: 1,687th place; English: 1,074th place)