Phylogenetics (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Phylogenetics" in English language version.

refsWebsite

Global rank English rank

69doi.org

2^nd place

40nih.gov

4^th place

21semanticscholar.org

11^th place

8^th place

18worldcat.org

5^th place

12jstor.org

26^th place

20^th place

11harvard.edu

18^th place

17^th place

5nature.com

234^th place

397^th place

4psu.edu

207^th place

136^th place

3oup.com

485^th place

440^th place

2archive.org

6^th place

2libretexts.org

3,627^th place

2,467^th place

2berkeley.edu

580^th place

462^nd place

2web.archive.org

1^st place

2handle.net

102^nd place

76^th place

1dictionary.com

794^th place

588^th place

1merriam-webster.com

209^th place

191^st place

1wiktionary.org

649^th place

827^th place

1biology-online.org

low place

1tau.ac.il

4,464^th place

4,468^th place

1stanford.edu

179^th place

183^rd place

1etymonline.com

287^th place

321^st place

1books.google.com

3^rd place

1nhm.ac.uk

2,525^th place

2,195^th place

1arxiv.org

69^th place

59^th place

1mpg.de

1,624^th place

1,592^nd place

1sciencedirect.com

149^th place

178^th place

archive.org

from Greek φυλή/φῦλον [phylé/phylon] "tribe, clan, race", and γενετικός [genetikós] "origin, source, birth" Liddell, Henry George; Scott, Robert; Jones, Henry Stuart (1968). A Greek-English lexicon (9 ed.). Oxford: Clarendon Press. p. 1961.
Cuénot, Lucien (1940). "Remarques sur un essai d'arbre genealogique du regne animal". Comptes rendus Academie des sciences 0210 (in French). Paris (France): Académie des sciences (France). p. 24.

arxiv.org

Cilibrasi, R.; Vitanyi, P.M.B. (April 2005). "Clustering by Compression". IEEE Transactions on Information Theory. 51 (4): 1523–1545. arXiv:cs/0312044. doi:10.1109/TIT.2005.844059. S2CID 911.

berkeley.edu

evolution.berkeley.edu

"Drug discovery - Understanding Evolution". 7 July 2021. Retrieved 23 April 2023.
"Early Evolution and Development: Ernst Haeckel". UC Museum of Paleontology.

biology-online.org

"phylogeny". Biology online. Retrieved 15 February 2013.

books.google.com

Stuessy 2009. Stuessy, Tod F. (2009). Plant Taxonomy: The Systematic Evaluation of Comparative Data. Columbia University Press. ISBN 978-0-231-14712-5.

dictionary.com

"phylogenetic". Dictionary.com Unabridged (Online). n.d.

doi.org

Herberts, Cameron; Annala, Matti; Sipola, Joonatan; Ng, Sarah W. S.; Chen, Xinyi E.; Nurminen, Anssi; Korhonen, Olga V.; Munzur, Aslı D.; Beja, Kevin; Schönlau, Elena; Bernales, Cecily Q.; Ritch, Elie; Bacon, Jack V. W.; Lack, Nathan A.; Nykter, Matti (August 2022). "Deep whole-genome ctDNA chronology of treatment-resistant prostate cancer". Nature. 608 (7921): 199–208. Bibcode:2022Natur.608..199H. doi:10.1038/s41586-022-04975-9. ISSN 1476-4687. PMID 35859180. S2CID 250730778.
Schwartz, Russell; Schäffer, Alejandro A. (April 2017). "The evolution of tumour phylogenetics: principles and practice". Nature Reviews Genetics. 18 (4): 213–229. doi:10.1038/nrg.2016.170. ISSN 1471-0056. PMC 5886015. PMID 28190876.
Ní Leathlobhair, Máire; Lenski, Richard E. (2022). "Population genetics of clonally transmissible cancers". Nature Ecology & Evolution. 6 (8): 1077–1089. Bibcode:2022NatEE...6.1077N. doi:10.1038/s41559-022-01790-3. ISSN 2397-334X. PMID 35879542.
Bernard, EJ; Azad, Y; Vandamme, AM; Weait, M; Geretti, AM (2007). "HIV forensics: pitfalls and acceptable standards in the use of phylogenetic analysis as evidence in criminal investigations of HIV transmission". HIV Medicine. 8 (6): 382–387. doi:10.1111/j.1468-1293.2007.00486.x. ISSN 1464-2662. PMID 17661846. S2CID 38883310.
Rosenberg, Michael (28 August 2001). "Incomplete taxon sampling is not a problem for phylogenetic inference". Proceedings of the National Academy of Sciences. 98 (19): 10751–10756. Bibcode:2001PNAS...9810751R. doi:10.1073/pnas.191248498. PMC 58547. PMID 11526218.
Rosenberg, Michael; Kumar, Sudhir (1 February 2003). "Taxon Sampling, Bioinformatics, and Phylogenetics". Systematic Biology. 52 (1): 119–124. doi:10.1080/10635150390132894. PMC 2796430. PMID 12554445. Retrieved 19 April 2023.
Bayes, Mr; Price, Mr (1763). "An Essay towards Solving a Problem in the Doctrine of Chances. By the Late Rev. Mr. Bayes, F. R. S. Communicated by Mr. Price, in a Letter to John Canton, A. M. F. R. S". Philosophical Transactions of the Royal Society of London. 53: 370–418. doi:10.1098/rstl.1763.0053.
Archibald, J. David (1 August 2009). "Edward Hitchcock's Pre-Darwinian (1840) "Tree of Life"". Journal of the History of Biology. 42 (3): 561–592. doi:10.1007/s10739-008-9163-y. ISSN 1573-0387. PMID 20027787. S2CID 16634677.
Archibald, J. David (2008). "Edward Hitchcock's Pre-Darwinian (1840) 'Tree of Life'". Journal of the History of Biology. 42 (3): 561–92. CiteSeerX 10.1.1.688.7842. doi:10.1007/s10739-008-9163-y. PMID 20027787. S2CID 16634677.
Darwin, Charles; Wallace, Alfred (1858). "On the Tendency of Species to form Varieties; and on the Perpetuation of Varieties and Species by Natural Means of Selection". Journal of the Proceedings of the Linnean Society of London. Zoology. 3 (9): 45–62. doi:10.1111/j.1096-3642.1858.tb02500.x.
Cavalier-Smith, Thomas (12 January 2010). "Deep phylogeny, ancestral groups and the four ages of life". Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365 (1537): 111–132. doi:10.1098/rstb.2009.0161. ISSN 1471-2970. PMC 2842702. PMID 20008390.
Galis, Frietson; Arntzen, Jan W.; Lande, Russell (2010). "Dollo's Law and the Irreversibility of Digit Loss in Bachia". Evolution. 64 (8): 2466–76, discussion 2477–85. doi:10.1111/j.1558-5646.2010.01041.x. PMID 20500218. S2CID 24520027. Retrieved 23 April 2023.
Tillyard, R. J (2012). "A New Classification of the Order Perlaria". The Canadian Entomologist. 53 (2): 35–43. doi:10.4039/Ent5335-2. S2CID 90171163.
Tassy, P.; Fischer, M. S. (2021). ""Cladus" and clade: a taxonomic odyssey". Theory in Biosciences. 140 (1): 77–85. doi:10.1007/s12064-020-00326-2. ISSN 1431-7613. PMC 7583691. PMID 33095417.
Waddington, C. H. (1948). "Neuere Probleme der Abstammungslehre Die Transspezifische Evolution". Nature. 162 (4130): 979–980. Bibcode:1948Natur.162..979W. doi:10.1038/162979a0. ISSN 1476-4687.
Elton, C. S. (1960). "Evolutionary Divergence". Nature. 187 (4736): 446. Bibcode:1960Natur.187..446E. doi:10.1038/187446a0. ISSN 1476-4687.
Huxley, Julian (1957). "The Three Types of Evolutionary Process". Nature. 180 (4584): 454–455. Bibcode:1957Natur.180..454H. doi:10.1038/180454a0. ISSN 1476-4687.
Cain, A. J; Harrison, G. A (2009). "Phyletic Weighting". Proceedings of the Zoological Society of London. 135 (1): 1–31. doi:10.1111/j.1469-7998.1960.tb05828.x.
"The reconstruction of evolution" in "Abstracts of Papers". Annals of Human Genetics. 27 (1): 103–5. 1963. doi:10.1111/j.1469-1809.1963.tb00786.x.
Camin, Joseph H; Sokal, Robert R (1965). "A Method for Deducing Branching Sequences in Phylogeny". Evolution. 19 (3): 311–26. doi:10.1111/j.1558-5646.1965.tb01722.x. S2CID 20957422.
Wilson, Edward O (1965). "A Consistency Test for Phylogenies Based on Contemporaneous Species". Systematic Zoology. 14 (3): 214–20. doi:10.2307/2411550. JSTOR 2411550.
Farris, James S (1969). "A Successive Approximations Approach to Character Weighting". Systematic Zoology. 18 (4): 374–85. doi:10.2307/2412182. JSTOR 2412182.
Kluge, A. G; Farris, J. S (1969). "Quantitative Phyletics and the Evolution of Anurans". Systematic Biology. 18 (1): 1–32. doi:10.1093/sysbio/18.1.1.
Quesne, Walter J. Le (1969). "A Method of Selection of Characters in Numerical Taxonomy". Systematic Zoology. 18 (2): 201–205. doi:10.2307/2412604. JSTOR 2412604.
Farris, J. S (1970). "Methods for Computing Wagner Trees". Systematic Biology. 19: 83–92. doi:10.1093/sysbio/19.1.83.
Neyman, Jerzy (1971). "Molecular studies of evolution: a source of novel statistical problems". Statistical Decision Theory and Related Topics. pp. 1–27. doi:10.1016/B978-0-12-307550-5.50005-8. ISBN 978-0-12-307550-5.
Fitch, W. M (1971). "Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology". Systematic Biology. 20 (4): 406–16. doi:10.1093/sysbio/20.4.406. JSTOR 2412116.
Robinson, D.F (1971). "Comparison of labeled trees with valency three". Journal of Combinatorial Theory. Series B. 11 (2): 105–19. doi:10.1016/0095-8956(71)90020-7.
Adams, E. N (1972). "Consensus Techniques and the Comparison of Taxonomic Trees". Systematic Biology. 21 (4): 390–397. doi:10.1093/sysbio/21.4.390.
Farris, James S (1976). "Phylogenetic Classification of Fossils with Recent Species". Systematic Zoology. 25 (3): 271–282. doi:10.2307/2412495. JSTOR 2412495.
Farris, J. S (1977). "Phylogenetic Analysis Under Dollo's Law". Systematic Biology. 26: 77–88. doi:10.1093/sysbio/26.1.77.
Nelson, G (1979). "Cladistic Analysis and Synthesis: Principles and Definitions, with a Historical Note on Adanson's Familles Des Plantes (1763-1764)". Systematic Biology. 28: 1–21. doi:10.1093/sysbio/28.1.1.
Gordon, A. D (1979). "A Measure of the Agreement between Rankings". Biometrika. 66 (1): 7–15. doi:10.1093/biomet/66.1.7. JSTOR 2335236.
Margush, T; McMorris, F (1981). "Consensus-trees". Bulletin of Mathematical Biology. 43 (2): 239. doi:10.1016/S0092-8240(81)90019-7 (inactive 1 November 2024).{{cite journal}}: CS1 maint: DOI inactive as of November 2024 (link)
Sokal, Robert R; Rohlf, F. James (1981). "Taxonomic Congruence in the Leptopodomorpha Re-Examined". Systematic Zoology. 30 (3): 309. doi:10.2307/2413252. JSTOR 2413252.
Felsenstein, Joseph (1981). "Evolutionary trees from DNA sequences: A maximum likelihood approach". Journal of Molecular Evolution. 17 (6): 368–76. Bibcode:1981JMolE..17..368F. doi:10.1007/BF01734359. PMID 7288891. S2CID 8024924.
Hendy, M.D; Penny, David (1982). "Branch and bound algorithms to determine minimal evolutionary trees". Mathematical Biosciences. 59 (2): 277. doi:10.1016/0025-5564(82)90027-X.
Lipscomb, Diana (1985). "The Eukaryotic Kingdoms". Cladistics. 1 (2): 127–40. doi:10.1111/j.1096-0031.1985.tb00417.x. PMID 34965673. S2CID 84151309.
Felsenstein, J (1985). "Confidence limits on phylogenies: an approach using the bootstrap". Evolution. 39 (4): 783–791. doi:10.2307/2408678. JSTOR 2408678. PMID 28561359.
Lanyon, S. M (1985). "Detecting Internal Inconsistencies in Distance Data". Systematic Biology. 34 (4): 397–403. CiteSeerX 10.1.1.1000.3956. doi:10.1093/sysbio/34.4.397.
Saitou, N.; Nei, M. (1987). "The neighbor-joining method: A new method for reconstructing phylogenetic trees". Molecular Biology and Evolution. 4 (4): 406–25. doi:10.1093/oxfordjournals.molbev.a040454. PMID 3447015.
Bremer, Kåre (1988). "The Limits of Amino Acid Sequence Data in Angiosperm Phylogenetic Reconstruction". Evolution. 42 (4): 795–803. doi:10.1111/j.1558-5646.1988.tb02497.x. PMID 28563878. S2CID 13647124.
Farris, James S (1989). "The Retention Index and the Rescaled Consistency Index". Cladistics. 5 (4): 417–419. doi:10.1111/j.1096-0031.1989.tb00573.x. PMID 34933481. S2CID 84287895.
Archie, James W (1989). "Homoplasy Excess Ratios: New Indices for Measuring Levels of Homoplasy in Phylogenetic Systematics and a Critique of the Consistency Index". Systematic Zoology. 38 (3): 253–269. doi:10.2307/2992286. JSTOR 2992286.
Bremer, Kåre (1990). "Combinable Component Consensus". Cladistics. 6 (4): 369–372. doi:10.1111/j.1096-0031.1990.tb00551.x. PMID 34933485. S2CID 84151348.
Goloboff, Pablo A (1991). "Homoplasy and the Choice Among Cladograms". Cladistics. 7 (3): 215–232. doi:10.1111/j.1096-0031.1991.tb00035.x. PMID 34933469. S2CID 85418697.
Goloboff, Pablo A (1991). "Random Data, Homoplasy and Information". Cladistics. 7 (4): 395–406. doi:10.1111/j.1096-0031.1991.tb00046.x. S2CID 85132346.
Goloboff, Pablo A (1993). "Estimating Character Weights During Tree Search". Cladistics. 9 (1): 83–91. doi:10.1111/j.1096-0031.1993.tb00209.x. PMID 34929936. S2CID 84231334.
Wilkinson, M (1994). "Common Cladistic Information and its Consensus Representation: Reduced Adams and Reduced Cladistic Consensus Trees and Profiles". Systematic Biology. 43 (3): 343–368. doi:10.1093/sysbio/43.3.343.
Wilkinson, Mark (1995). "More on Reduced Consensus Methods". Systematic Biology. 44 (3): 435–439. doi:10.2307/2413604. JSTOR 2413604.
Li, Shuying; Pearl, Dennis K; Doss, Hani (2000). "Phylogenetic Tree Construction Using Markov Chain Monte Carlo". Journal of the American Statistical Association. 95 (450): 493. CiteSeerX 10.1.1.40.4461. doi:10.1080/01621459.2000.10474227. JSTOR 2669394. S2CID 122459537.
Mau, Bob; Newton, Michael A; Larget, Bret (1999). "Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods". Biometrics. 55 (1): 1–12. CiteSeerX 10.1.1.139.498. doi:10.1111/j.0006-341X.1999.00001.x. JSTOR 2533889. PMID 11318142. S2CID 932887.
Rannala, Bruce; Yang, Ziheng (1996). "Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference". Journal of Molecular Evolution. 43 (3): 304–11. Bibcode:1996JMolE..43..304R. doi:10.1007/BF02338839. PMID 8703097. S2CID 8269826.
Goloboff, P (2003). "Improvements to resampling measures of group support". Cladistics. 19 (4): 324–32. doi:10.1111/j.1096-0031.2003.tb00376.x. hdl:11336/101057. S2CID 55516104.
Li, M.; Chen, X.; Li, X.; Ma, B.; Vitanyi, P.M.B. (December 2004). "The Similarity Metric". IEEE Transactions on Information Theory. 50 (12): 3250–3264. doi:10.1109/TIT.2004.838101. S2CID 221927.
Cilibrasi, R.; Vitanyi, P.M.B. (April 2005). "Clustering by Compression". IEEE Transactions on Information Theory. 51 (4): 1523–1545. arXiv:cs/0312044. doi:10.1109/TIT.2005.844059. S2CID 911.
Alam, M. Masidur; Naeem, M.; Khan, M. Masroor A.; Uddin, Moin (2017), Naeem, M.; Aftab, Tariq; Khan, M. Masroor A. (eds.), "Vincristine and Vinblastine Anticancer Catharanthus Alkaloids: Pharmacological Applications and Strategies for Yield Improvement", Catharanthus roseus: Current Research and Future Prospects, Cham: Springer International Publishing, pp. 277–307, doi:10.1007/978-3-319-51620-2_11, ISBN 978-3-319-51620-2, retrieved 23 July 2024
Colijn, Caroline; Gardy, Jennifer (1 January 2014). "Phylogenetic tree shapes resolve disease transmission patterns". Evolution, Medicine, and Public Health. 2014 (1): 96–108. doi:10.1093/emph/eou018. ISSN 2050-6201. PMC 4097963. PMID 24916411.
Pagel, Mark (2017). "Darwinian perspectives on the evolution of human languages". Psychonomic Bulletin & Review. 24 (1): 151–157. doi:10.3758/s13423-016-1072-z. ISSN 1069-9384. PMC 5325856. PMID 27368626.
Bowern, Claire (14 January 2018). "Computational Phylogenetics". Annual Review of Linguistics. 4 (1): 281–296. doi:10.1146/annurev-linguistics-011516-034142. ISSN 2333-9683.
Retzlaff, Nancy; Stadler, Peter F. (2018). "Phylogenetics beyond biology". Theory in Biosciences. 137 (2): 133–143. doi:10.1007/s12064-018-0264-7. ISSN 1431-7613. PMC 6208858. PMID 29931521.
Hoffmann, Konstantin; Bouckaert, Remco; Greenhill, Simon J; Kühnert, Denise (25 November 2021). "Bayesian phylogenetic analysis of linguistic data using BEAST". Journal of Language Evolution. 6 (2): 119–135. doi:10.1093/jole/lzab005. hdl:1885/311145. ISSN 2058-458X.
Spencer, Matthew; Davidson, Elizabeth A; Barbrook, Adrian C; Howe, Christopher J (21 April 2004). "Phylogenetics of artificial manuscripts". Journal of Theoretical Biology. 227 (4): 503–511. Bibcode:2004JThBi.227..503S. doi:10.1016/j.jtbi.2003.11.022. ISSN 0022-5193. PMID 15038985.
Lycett, Stephen J. (14 October 2009). "Understanding Ancient Hominin Dispersals Using Artefactual Data: A Phylogeographic Analysis of Acheulean Handaxes". PLOS ONE. 4 (10): e7404. Bibcode:2009PLoSO...4.7404L. doi:10.1371/journal.pone.0007404. PMC 2756619. PMID 19826473.
Tripp, Allison (2016). "A Cladistics Analysis Exploring Regional Patterning of the Anthropomorphic Figurines from the Gravettian". Cultural Phylogenetics. Interdisciplinary Evolution Research. Vol. 4. pp. 179–202. doi:10.1007/978-3-319-25928-4_8. ISBN 978-3-319-25926-0. {{cite book}}: |journal= ignored (help)
Marwick, Ben; Matzig, David; Riede, Felix. "Bayesian inference of material culture phylogenies using continuous traits: A birth–death model for Late Neolithic/Early Bronze Age arrowheads from Northwestern Europe". Osf.io. doi:10.31235/osf.io/j2kva.
Manem, Sébastien (1 December 2020). "Modeling the Evolution of Ceramic Traditions Through a Phylogenetic Analysis of the Chaînes Opératoires: the European Bronze Age as a Case Study". Journal of Archaeological Method and Theory. 27 (4): 992–1039. doi:10.1007/s10816-019-09434-w.
O'Brien, Michael J.; Lyman, R. Lee (1 March 2000). "Darwinian Evolutionism Is Applicable to Historical Archaeology". International Journal of Historical Archaeology. 4 (1): 71–112. doi:10.1023/A:1009556427520.
Matzig, David N.; Marwick, Ben; Riede, Felix; Warnock, Rachel C. M. (August 2024). "A macroevolutionary analysis of European Late Upper Palaeolithic stone tool shape using a Bayesian phylodynamic framework". Royal Society Open Science. 11 (8). Bibcode:2024RSOS...1140321M. doi:10.1098/rsos.240321. PMC 11321859. PMID 39144489.

etymonline.com

Harper, Douglas (2010). "Phylogeny". Online Etymology Dictionary.

handle.net

hdl.handle.net

Goloboff, P (2003). "Improvements to resampling measures of group support". Cladistics. 19 (4): 324–32. doi:10.1111/j.1096-0031.2003.tb00376.x. hdl:11336/101057. S2CID 55516104.
Hoffmann, Konstantin; Bouckaert, Remco; Greenhill, Simon J; Kühnert, Denise (25 November 2021). "Bayesian phylogenetic analysis of linguistic data using BEAST". Journal of Language Evolution. 6 (2): 119–135. doi:10.1093/jole/lzab005. hdl:1885/311145. ISSN 2058-458X.

harvard.edu

ui.adsabs.harvard.edu

Herberts, Cameron; Annala, Matti; Sipola, Joonatan; Ng, Sarah W. S.; Chen, Xinyi E.; Nurminen, Anssi; Korhonen, Olga V.; Munzur, Aslı D.; Beja, Kevin; Schönlau, Elena; Bernales, Cecily Q.; Ritch, Elie; Bacon, Jack V. W.; Lack, Nathan A.; Nykter, Matti (August 2022). "Deep whole-genome ctDNA chronology of treatment-resistant prostate cancer". Nature. 608 (7921): 199–208. Bibcode:2022Natur.608..199H. doi:10.1038/s41586-022-04975-9. ISSN 1476-4687. PMID 35859180. S2CID 250730778.
Ní Leathlobhair, Máire; Lenski, Richard E. (2022). "Population genetics of clonally transmissible cancers". Nature Ecology & Evolution. 6 (8): 1077–1089. Bibcode:2022NatEE...6.1077N. doi:10.1038/s41559-022-01790-3. ISSN 2397-334X. PMID 35879542.
Rosenberg, Michael (28 August 2001). "Incomplete taxon sampling is not a problem for phylogenetic inference". Proceedings of the National Academy of Sciences. 98 (19): 10751–10756. Bibcode:2001PNAS...9810751R. doi:10.1073/pnas.191248498. PMC 58547. PMID 11526218.
Waddington, C. H. (1948). "Neuere Probleme der Abstammungslehre Die Transspezifische Evolution". Nature. 162 (4130): 979–980. Bibcode:1948Natur.162..979W. doi:10.1038/162979a0. ISSN 1476-4687.
Elton, C. S. (1960). "Evolutionary Divergence". Nature. 187 (4736): 446. Bibcode:1960Natur.187..446E. doi:10.1038/187446a0. ISSN 1476-4687.
Huxley, Julian (1957). "The Three Types of Evolutionary Process". Nature. 180 (4584): 454–455. Bibcode:1957Natur.180..454H. doi:10.1038/180454a0. ISSN 1476-4687.
Felsenstein, Joseph (1981). "Evolutionary trees from DNA sequences: A maximum likelihood approach". Journal of Molecular Evolution. 17 (6): 368–76. Bibcode:1981JMolE..17..368F. doi:10.1007/BF01734359. PMID 7288891. S2CID 8024924.
Rannala, Bruce; Yang, Ziheng (1996). "Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference". Journal of Molecular Evolution. 43 (3): 304–11. Bibcode:1996JMolE..43..304R. doi:10.1007/BF02338839. PMID 8703097. S2CID 8269826.
Spencer, Matthew; Davidson, Elizabeth A; Barbrook, Adrian C; Howe, Christopher J (21 April 2004). "Phylogenetics of artificial manuscripts". Journal of Theoretical Biology. 227 (4): 503–511. Bibcode:2004JThBi.227..503S. doi:10.1016/j.jtbi.2003.11.022. ISSN 0022-5193. PMID 15038985.
Lycett, Stephen J. (14 October 2009). "Understanding Ancient Hominin Dispersals Using Artefactual Data: A Phylogeographic Analysis of Acheulean Handaxes". PLOS ONE. 4 (10): e7404. Bibcode:2009PLoSO...4.7404L. doi:10.1371/journal.pone.0007404. PMC 2756619. PMID 19826473.
Matzig, David N.; Marwick, Ben; Riede, Felix; Warnock, Rachel C. M. (August 2024). "A macroevolutionary analysis of European Late Upper Palaeolithic stone tool shape using a Bayesian phylodynamic framework". Royal Society Open Science. 11 (8). Bibcode:2024RSOS...1140321M. doi:10.1098/rsos.240321. PMC 11321859. PMID 39144489.

jstor.org

Wilson, Edward O (1965). "A Consistency Test for Phylogenies Based on Contemporaneous Species". Systematic Zoology. 14 (3): 214–20. doi:10.2307/2411550. JSTOR 2411550.
Farris, James S (1969). "A Successive Approximations Approach to Character Weighting". Systematic Zoology. 18 (4): 374–85. doi:10.2307/2412182. JSTOR 2412182.
Quesne, Walter J. Le (1969). "A Method of Selection of Characters in Numerical Taxonomy". Systematic Zoology. 18 (2): 201–205. doi:10.2307/2412604. JSTOR 2412604.
Fitch, W. M (1971). "Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology". Systematic Biology. 20 (4): 406–16. doi:10.1093/sysbio/20.4.406. JSTOR 2412116.
Farris, James S (1976). "Phylogenetic Classification of Fossils with Recent Species". Systematic Zoology. 25 (3): 271–282. doi:10.2307/2412495. JSTOR 2412495.
Gordon, A. D (1979). "A Measure of the Agreement between Rankings". Biometrika. 66 (1): 7–15. doi:10.1093/biomet/66.1.7. JSTOR 2335236.
Sokal, Robert R; Rohlf, F. James (1981). "Taxonomic Congruence in the Leptopodomorpha Re-Examined". Systematic Zoology. 30 (3): 309. doi:10.2307/2413252. JSTOR 2413252.
Felsenstein, J (1985). "Confidence limits on phylogenies: an approach using the bootstrap". Evolution. 39 (4): 783–791. doi:10.2307/2408678. JSTOR 2408678. PMID 28561359.
Archie, James W (1989). "Homoplasy Excess Ratios: New Indices for Measuring Levels of Homoplasy in Phylogenetic Systematics and a Critique of the Consistency Index". Systematic Zoology. 38 (3): 253–269. doi:10.2307/2992286. JSTOR 2992286.
Wilkinson, Mark (1995). "More on Reduced Consensus Methods". Systematic Biology. 44 (3): 435–439. doi:10.2307/2413604. JSTOR 2413604.
Li, Shuying; Pearl, Dennis K; Doss, Hani (2000). "Phylogenetic Tree Construction Using Markov Chain Monte Carlo". Journal of the American Statistical Association. 95 (450): 493. CiteSeerX 10.1.1.40.4461. doi:10.1080/01621459.2000.10474227. JSTOR 2669394. S2CID 122459537.
Mau, Bob; Newton, Michael A; Larget, Bret (1999). "Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods". Biometrics. 55 (1): 1–12. CiteSeerX 10.1.1.139.498. doi:10.1111/j.0006-341X.1999.00001.x. JSTOR 2533889. PMID 11318142. S2CID 932887.

libretexts.org

bio.libretexts.org

Harris, Katherine (23 June 2019). Taxonomy & Phylogeny. Biology LibreTexts. Retrieved 19 April 2023.
CK-12 Foundation (6 March 2021). Linnaean Classification. Biology LibreTexts. Retrieved 19 April 2023.{{cite book}}: CS1 maint: numeric names: authors list (link)

merriam-webster.com

"phylogenetic". Merriam-Webster.com Dictionary. Merriam-Webster.

mpg.de

mpi-lingweb.shh.mpg.de

Heggarty, Paul (2006). "Interdisciplinary Indiscipline? Can Phylogenetic Methods Meaningfully Be Applied to Language Data — and to Dating Language?" (PDF). In Peter Forster; Colin Renfrew (eds.). Phylogenetic Methods and the Prehistory of Languages. McDonald Institute Monographs. McDonald Institute for Archaeological Research. Archived from the original (PDF) on 28 January 2021. Retrieved 19 January 2021.

nature.com

Herberts, Cameron; Annala, Matti; Sipola, Joonatan; Ng, Sarah W. S.; Chen, Xinyi E.; Nurminen, Anssi; Korhonen, Olga V.; Munzur, Aslı D.; Beja, Kevin; Schönlau, Elena; Bernales, Cecily Q.; Ritch, Elie; Bacon, Jack V. W.; Lack, Nathan A.; Nykter, Matti (August 2022). "Deep whole-genome ctDNA chronology of treatment-resistant prostate cancer". Nature. 608 (7921): 199–208. Bibcode:2022Natur.608..199H. doi:10.1038/s41586-022-04975-9. ISSN 1476-4687. PMID 35859180. S2CID 250730778.
Ní Leathlobhair, Máire; Lenski, Richard E. (2022). "Population genetics of clonally transmissible cancers". Nature Ecology & Evolution. 6 (8): 1077–1089. Bibcode:2022NatEE...6.1077N. doi:10.1038/s41559-022-01790-3. ISSN 2397-334X. PMID 35879542.
Waddington, C. H. (1948). "Neuere Probleme der Abstammungslehre Die Transspezifische Evolution". Nature. 162 (4130): 979–980. Bibcode:1948Natur.162..979W. doi:10.1038/162979a0. ISSN 1476-4687.
Elton, C. S. (1960). "Evolutionary Divergence". Nature. 187 (4736): 446. Bibcode:1960Natur.187..446E. doi:10.1038/187446a0. ISSN 1476-4687.
Huxley, Julian (1957). "The Three Types of Evolutionary Process". Nature. 180 (4584): 454–455. Bibcode:1957Natur.180..454H. doi:10.1038/180454a0. ISSN 1476-4687.

nhm.ac.uk

Darwin's Tree of Life Archived 13 March 2014 at the Wayback Machine

nih.gov

pubmed.ncbi.nlm.nih.gov

Herberts, Cameron; Annala, Matti; Sipola, Joonatan; Ng, Sarah W. S.; Chen, Xinyi E.; Nurminen, Anssi; Korhonen, Olga V.; Munzur, Aslı D.; Beja, Kevin; Schönlau, Elena; Bernales, Cecily Q.; Ritch, Elie; Bacon, Jack V. W.; Lack, Nathan A.; Nykter, Matti (August 2022). "Deep whole-genome ctDNA chronology of treatment-resistant prostate cancer". Nature. 608 (7921): 199–208. Bibcode:2022Natur.608..199H. doi:10.1038/s41586-022-04975-9. ISSN 1476-4687. PMID 35859180. S2CID 250730778.
Schwartz, Russell; Schäffer, Alejandro A. (April 2017). "The evolution of tumour phylogenetics: principles and practice". Nature Reviews Genetics. 18 (4): 213–229. doi:10.1038/nrg.2016.170. ISSN 1471-0056. PMC 5886015. PMID 28190876.
Ní Leathlobhair, Máire; Lenski, Richard E. (2022). "Population genetics of clonally transmissible cancers". Nature Ecology & Evolution. 6 (8): 1077–1089. Bibcode:2022NatEE...6.1077N. doi:10.1038/s41559-022-01790-3. ISSN 2397-334X. PMID 35879542.
Bernard, EJ; Azad, Y; Vandamme, AM; Weait, M; Geretti, AM (2007). "HIV forensics: pitfalls and acceptable standards in the use of phylogenetic analysis as evidence in criminal investigations of HIV transmission". HIV Medicine. 8 (6): 382–387. doi:10.1111/j.1468-1293.2007.00486.x. ISSN 1464-2662. PMID 17661846. S2CID 38883310.
Rosenberg, Michael (28 August 2001). "Incomplete taxon sampling is not a problem for phylogenetic inference". Proceedings of the National Academy of Sciences. 98 (19): 10751–10756. Bibcode:2001PNAS...9810751R. doi:10.1073/pnas.191248498. PMC 58547. PMID 11526218.
Rosenberg, Michael; Kumar, Sudhir (1 February 2003). "Taxon Sampling, Bioinformatics, and Phylogenetics". Systematic Biology. 52 (1): 119–124. doi:10.1080/10635150390132894. PMC 2796430. PMID 12554445. Retrieved 19 April 2023.
Archibald, J. David (1 August 2009). "Edward Hitchcock's Pre-Darwinian (1840) "Tree of Life"". Journal of the History of Biology. 42 (3): 561–592. doi:10.1007/s10739-008-9163-y. ISSN 1573-0387. PMID 20027787. S2CID 16634677.
Archibald, J. David (2008). "Edward Hitchcock's Pre-Darwinian (1840) 'Tree of Life'". Journal of the History of Biology. 42 (3): 561–92. CiteSeerX 10.1.1.688.7842. doi:10.1007/s10739-008-9163-y. PMID 20027787. S2CID 16634677.
Cavalier-Smith, Thomas (12 January 2010). "Deep phylogeny, ancestral groups and the four ages of life". Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365 (1537): 111–132. doi:10.1098/rstb.2009.0161. ISSN 1471-2970. PMC 2842702. PMID 20008390.
Galis, Frietson; Arntzen, Jan W.; Lande, Russell (2010). "Dollo's Law and the Irreversibility of Digit Loss in Bachia". Evolution. 64 (8): 2466–76, discussion 2477–85. doi:10.1111/j.1558-5646.2010.01041.x. PMID 20500218. S2CID 24520027. Retrieved 23 April 2023.
Tassy, P.; Fischer, M. S. (2021). ""Cladus" and clade: a taxonomic odyssey". Theory in Biosciences. 140 (1): 77–85. doi:10.1007/s12064-020-00326-2. ISSN 1431-7613. PMC 7583691. PMID 33095417.
Kidd, K. K; Sgaramella-Zonta, L. A (1971). "Phylogenetic analysis: Concepts and methods". American Journal of Human Genetics. 23 (3): 235–52. PMC 1706731. PMID 5089842.
Felsenstein, Joseph (1981). "Evolutionary trees from DNA sequences: A maximum likelihood approach". Journal of Molecular Evolution. 17 (6): 368–76. Bibcode:1981JMolE..17..368F. doi:10.1007/BF01734359. PMID 7288891. S2CID 8024924.
Lipscomb, Diana (1985). "The Eukaryotic Kingdoms". Cladistics. 1 (2): 127–40. doi:10.1111/j.1096-0031.1985.tb00417.x. PMID 34965673. S2CID 84151309.
Felsenstein, J (1985). "Confidence limits on phylogenies: an approach using the bootstrap". Evolution. 39 (4): 783–791. doi:10.2307/2408678. JSTOR 2408678. PMID 28561359.
Saitou, N.; Nei, M. (1987). "The neighbor-joining method: A new method for reconstructing phylogenetic trees". Molecular Biology and Evolution. 4 (4): 406–25. doi:10.1093/oxfordjournals.molbev.a040454. PMID 3447015.
Bremer, Kåre (1988). "The Limits of Amino Acid Sequence Data in Angiosperm Phylogenetic Reconstruction". Evolution. 42 (4): 795–803. doi:10.1111/j.1558-5646.1988.tb02497.x. PMID 28563878. S2CID 13647124.
Farris, James S (1989). "The Retention Index and the Rescaled Consistency Index". Cladistics. 5 (4): 417–419. doi:10.1111/j.1096-0031.1989.tb00573.x. PMID 34933481. S2CID 84287895.
Bremer, Kåre (1990). "Combinable Component Consensus". Cladistics. 6 (4): 369–372. doi:10.1111/j.1096-0031.1990.tb00551.x. PMID 34933485. S2CID 84151348.
Goloboff, Pablo A (1991). "Homoplasy and the Choice Among Cladograms". Cladistics. 7 (3): 215–232. doi:10.1111/j.1096-0031.1991.tb00035.x. PMID 34933469. S2CID 85418697.
Goloboff, Pablo A (1993). "Estimating Character Weights During Tree Search". Cladistics. 9 (1): 83–91. doi:10.1111/j.1096-0031.1993.tb00209.x. PMID 34929936. S2CID 84231334.
Mau, Bob; Newton, Michael A; Larget, Bret (1999). "Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods". Biometrics. 55 (1): 1–12. CiteSeerX 10.1.1.139.498. doi:10.1111/j.0006-341X.1999.00001.x. JSTOR 2533889. PMID 11318142. S2CID 932887.
Rannala, Bruce; Yang, Ziheng (1996). "Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference". Journal of Molecular Evolution. 43 (3): 304–11. Bibcode:1996JMolE..43..304R. doi:10.1007/BF02338839. PMID 8703097. S2CID 8269826.
Colijn, Caroline; Gardy, Jennifer (1 January 2014). "Phylogenetic tree shapes resolve disease transmission patterns". Evolution, Medicine, and Public Health. 2014 (1): 96–108. doi:10.1093/emph/eou018. ISSN 2050-6201. PMC 4097963. PMID 24916411.
Pagel, Mark (2017). "Darwinian perspectives on the evolution of human languages". Psychonomic Bulletin & Review. 24 (1): 151–157. doi:10.3758/s13423-016-1072-z. ISSN 1069-9384. PMC 5325856. PMID 27368626.
Retzlaff, Nancy; Stadler, Peter F. (2018). "Phylogenetics beyond biology". Theory in Biosciences. 137 (2): 133–143. doi:10.1007/s12064-018-0264-7. ISSN 1431-7613. PMC 6208858. PMID 29931521.
Spencer, Matthew; Davidson, Elizabeth A; Barbrook, Adrian C; Howe, Christopher J (21 April 2004). "Phylogenetics of artificial manuscripts". Journal of Theoretical Biology. 227 (4): 503–511. Bibcode:2004JThBi.227..503S. doi:10.1016/j.jtbi.2003.11.022. ISSN 0022-5193. PMID 15038985.
Lycett, Stephen J. (14 October 2009). "Understanding Ancient Hominin Dispersals Using Artefactual Data: A Phylogeographic Analysis of Acheulean Handaxes". PLOS ONE. 4 (10): e7404. Bibcode:2009PLoSO...4.7404L. doi:10.1371/journal.pone.0007404. PMC 2756619. PMID 19826473.
Matzig, David N.; Marwick, Ben; Riede, Felix; Warnock, Rachel C. M. (August 2024). "A macroevolutionary analysis of European Late Upper Palaeolithic stone tool shape using a Bayesian phylodynamic framework". Royal Society Open Science. 11 (8). Bibcode:2024RSOS...1140321M. doi:10.1098/rsos.240321. PMC 11321859. PMID 39144489.

ncbi.nlm.nih.gov

Schwartz, Russell; Schäffer, Alejandro A. (April 2017). "The evolution of tumour phylogenetics: principles and practice". Nature Reviews Genetics. 18 (4): 213–229. doi:10.1038/nrg.2016.170. ISSN 1471-0056. PMC 5886015. PMID 28190876.
Rosenberg, Michael (28 August 2001). "Incomplete taxon sampling is not a problem for phylogenetic inference". Proceedings of the National Academy of Sciences. 98 (19): 10751–10756. Bibcode:2001PNAS...9810751R. doi:10.1073/pnas.191248498. PMC 58547. PMID 11526218.
Rosenberg, Michael; Kumar, Sudhir (1 February 2003). "Taxon Sampling, Bioinformatics, and Phylogenetics". Systematic Biology. 52 (1): 119–124. doi:10.1080/10635150390132894. PMC 2796430. PMID 12554445. Retrieved 19 April 2023.
Cavalier-Smith, Thomas (12 January 2010). "Deep phylogeny, ancestral groups and the four ages of life". Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365 (1537): 111–132. doi:10.1098/rstb.2009.0161. ISSN 1471-2970. PMC 2842702. PMID 20008390.
Tassy, P.; Fischer, M. S. (2021). ""Cladus" and clade: a taxonomic odyssey". Theory in Biosciences. 140 (1): 77–85. doi:10.1007/s12064-020-00326-2. ISSN 1431-7613. PMC 7583691. PMID 33095417.
Kidd, K. K; Sgaramella-Zonta, L. A (1971). "Phylogenetic analysis: Concepts and methods". American Journal of Human Genetics. 23 (3): 235–52. PMC 1706731. PMID 5089842.
Colijn, Caroline; Gardy, Jennifer (1 January 2014). "Phylogenetic tree shapes resolve disease transmission patterns". Evolution, Medicine, and Public Health. 2014 (1): 96–108. doi:10.1093/emph/eou018. ISSN 2050-6201. PMC 4097963. PMID 24916411.
Pagel, Mark (2017). "Darwinian perspectives on the evolution of human languages". Psychonomic Bulletin & Review. 24 (1): 151–157. doi:10.3758/s13423-016-1072-z. ISSN 1069-9384. PMC 5325856. PMID 27368626.
Retzlaff, Nancy; Stadler, Peter F. (2018). "Phylogenetics beyond biology". Theory in Biosciences. 137 (2): 133–143. doi:10.1007/s12064-018-0264-7. ISSN 1431-7613. PMC 6208858. PMID 29931521.
Lycett, Stephen J. (14 October 2009). "Understanding Ancient Hominin Dispersals Using Artefactual Data: A Phylogeographic Analysis of Acheulean Handaxes". PLOS ONE. 4 (10): e7404. Bibcode:2009PLoSO...4.7404L. doi:10.1371/journal.pone.0007404. PMC 2756619. PMID 19826473.
Matzig, David N.; Marwick, Ben; Riede, Felix; Warnock, Rachel C. M. (August 2024). "A macroevolutionary analysis of European Late Upper Palaeolithic stone tool shape using a Bayesian phylodynamic framework". Royal Society Open Science. 11 (8). Bibcode:2024RSOS...1140321M. doi:10.1098/rsos.240321. PMC 11321859. PMID 39144489.

oup.com

academic.oup.com

Galis, Frietson; Arntzen, Jan W.; Lande, Russell (2010). "Dollo's Law and the Irreversibility of Digit Loss in Bachia". Evolution. 64 (8): 2466–76, discussion 2477–85. doi:10.1111/j.1558-5646.2010.01041.x. PMID 20500218. S2CID 24520027. Retrieved 23 April 2023.
Colijn, Caroline; Gardy, Jennifer (1 January 2014). "Phylogenetic tree shapes resolve disease transmission patterns". Evolution, Medicine, and Public Health. 2014 (1): 96–108. doi:10.1093/emph/eou018. ISSN 2050-6201. PMC 4097963. PMID 24916411.
Hoffmann, Konstantin; Bouckaert, Remco; Greenhill, Simon J; Kühnert, Denise (25 November 2021). "Bayesian phylogenetic analysis of linguistic data using BEAST". Journal of Language Evolution. 6 (2): 119–135. doi:10.1093/jole/lzab005. hdl:1885/311145. ISSN 2058-458X.

psu.edu

citeseerx.ist.psu.edu

Archibald, J. David (2008). "Edward Hitchcock's Pre-Darwinian (1840) 'Tree of Life'". Journal of the History of Biology. 42 (3): 561–92. CiteSeerX 10.1.1.688.7842. doi:10.1007/s10739-008-9163-y. PMID 20027787. S2CID 16634677.
Lanyon, S. M (1985). "Detecting Internal Inconsistencies in Distance Data". Systematic Biology. 34 (4): 397–403. CiteSeerX 10.1.1.1000.3956. doi:10.1093/sysbio/34.4.397.
Li, Shuying; Pearl, Dennis K; Doss, Hani (2000). "Phylogenetic Tree Construction Using Markov Chain Monte Carlo". Journal of the American Statistical Association. 95 (450): 493. CiteSeerX 10.1.1.40.4461. doi:10.1080/01621459.2000.10474227. JSTOR 2669394. S2CID 122459537.
Mau, Bob; Newton, Michael A; Larget, Bret (1999). "Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods". Biometrics. 55 (1): 1–12. CiteSeerX 10.1.1.139.498. doi:10.1111/j.0006-341X.1999.00001.x. JSTOR 2533889. PMID 11318142. S2CID 932887.

sciencedirect.com

Spencer, Matthew; Davidson, Elizabeth A; Barbrook, Adrian C; Howe, Christopher J (21 April 2004). "Phylogenetics of artificial manuscripts". Journal of Theoretical Biology. 227 (4): 503–511. Bibcode:2004JThBi.227..503S. doi:10.1016/j.jtbi.2003.11.022. ISSN 0022-5193. PMID 15038985.

semanticscholar.org

api.semanticscholar.org

Herberts, Cameron; Annala, Matti; Sipola, Joonatan; Ng, Sarah W. S.; Chen, Xinyi E.; Nurminen, Anssi; Korhonen, Olga V.; Munzur, Aslı D.; Beja, Kevin; Schönlau, Elena; Bernales, Cecily Q.; Ritch, Elie; Bacon, Jack V. W.; Lack, Nathan A.; Nykter, Matti (August 2022). "Deep whole-genome ctDNA chronology of treatment-resistant prostate cancer". Nature. 608 (7921): 199–208. Bibcode:2022Natur.608..199H. doi:10.1038/s41586-022-04975-9. ISSN 1476-4687. PMID 35859180. S2CID 250730778.
Bernard, EJ; Azad, Y; Vandamme, AM; Weait, M; Geretti, AM (2007). "HIV forensics: pitfalls and acceptable standards in the use of phylogenetic analysis as evidence in criminal investigations of HIV transmission". HIV Medicine. 8 (6): 382–387. doi:10.1111/j.1468-1293.2007.00486.x. ISSN 1464-2662. PMID 17661846. S2CID 38883310.
Archibald, J. David (1 August 2009). "Edward Hitchcock's Pre-Darwinian (1840) "Tree of Life"". Journal of the History of Biology. 42 (3): 561–592. doi:10.1007/s10739-008-9163-y. ISSN 1573-0387. PMID 20027787. S2CID 16634677.
Archibald, J. David (2008). "Edward Hitchcock's Pre-Darwinian (1840) 'Tree of Life'". Journal of the History of Biology. 42 (3): 561–92. CiteSeerX 10.1.1.688.7842. doi:10.1007/s10739-008-9163-y. PMID 20027787. S2CID 16634677.
Galis, Frietson; Arntzen, Jan W.; Lande, Russell (2010). "Dollo's Law and the Irreversibility of Digit Loss in Bachia". Evolution. 64 (8): 2466–76, discussion 2477–85. doi:10.1111/j.1558-5646.2010.01041.x. PMID 20500218. S2CID 24520027. Retrieved 23 April 2023.
Tillyard, R. J (2012). "A New Classification of the Order Perlaria". The Canadian Entomologist. 53 (2): 35–43. doi:10.4039/Ent5335-2. S2CID 90171163.
Camin, Joseph H; Sokal, Robert R (1965). "A Method for Deducing Branching Sequences in Phylogeny". Evolution. 19 (3): 311–26. doi:10.1111/j.1558-5646.1965.tb01722.x. S2CID 20957422.
Felsenstein, Joseph (1981). "Evolutionary trees from DNA sequences: A maximum likelihood approach". Journal of Molecular Evolution. 17 (6): 368–76. Bibcode:1981JMolE..17..368F. doi:10.1007/BF01734359. PMID 7288891. S2CID 8024924.
Lipscomb, Diana (1985). "The Eukaryotic Kingdoms". Cladistics. 1 (2): 127–40. doi:10.1111/j.1096-0031.1985.tb00417.x. PMID 34965673. S2CID 84151309.
Bremer, Kåre (1988). "The Limits of Amino Acid Sequence Data in Angiosperm Phylogenetic Reconstruction". Evolution. 42 (4): 795–803. doi:10.1111/j.1558-5646.1988.tb02497.x. PMID 28563878. S2CID 13647124.
Farris, James S (1989). "The Retention Index and the Rescaled Consistency Index". Cladistics. 5 (4): 417–419. doi:10.1111/j.1096-0031.1989.tb00573.x. PMID 34933481. S2CID 84287895.
Bremer, Kåre (1990). "Combinable Component Consensus". Cladistics. 6 (4): 369–372. doi:10.1111/j.1096-0031.1990.tb00551.x. PMID 34933485. S2CID 84151348.
Goloboff, Pablo A (1991). "Homoplasy and the Choice Among Cladograms". Cladistics. 7 (3): 215–232. doi:10.1111/j.1096-0031.1991.tb00035.x. PMID 34933469. S2CID 85418697.
Goloboff, Pablo A (1991). "Random Data, Homoplasy and Information". Cladistics. 7 (4): 395–406. doi:10.1111/j.1096-0031.1991.tb00046.x. S2CID 85132346.
Goloboff, Pablo A (1993). "Estimating Character Weights During Tree Search". Cladistics. 9 (1): 83–91. doi:10.1111/j.1096-0031.1993.tb00209.x. PMID 34929936. S2CID 84231334.
Li, Shuying; Pearl, Dennis K; Doss, Hani (2000). "Phylogenetic Tree Construction Using Markov Chain Monte Carlo". Journal of the American Statistical Association. 95 (450): 493. CiteSeerX 10.1.1.40.4461. doi:10.1080/01621459.2000.10474227. JSTOR 2669394. S2CID 122459537.
Mau, Bob; Newton, Michael A; Larget, Bret (1999). "Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods". Biometrics. 55 (1): 1–12. CiteSeerX 10.1.1.139.498. doi:10.1111/j.0006-341X.1999.00001.x. JSTOR 2533889. PMID 11318142. S2CID 932887.
Rannala, Bruce; Yang, Ziheng (1996). "Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference". Journal of Molecular Evolution. 43 (3): 304–11. Bibcode:1996JMolE..43..304R. doi:10.1007/BF02338839. PMID 8703097. S2CID 8269826.
Goloboff, P (2003). "Improvements to resampling measures of group support". Cladistics. 19 (4): 324–32. doi:10.1111/j.1096-0031.2003.tb00376.x. hdl:11336/101057. S2CID 55516104.
Li, M.; Chen, X.; Li, X.; Ma, B.; Vitanyi, P.M.B. (December 2004). "The Similarity Metric". IEEE Transactions on Information Theory. 50 (12): 3250–3264. doi:10.1109/TIT.2004.838101. S2CID 221927.
Cilibrasi, R.; Vitanyi, P.M.B. (April 2005). "Clustering by Compression". IEEE Transactions on Information Theory. 51 (4): 1523–1545. arXiv:cs/0312044. doi:10.1109/TIT.2005.844059. S2CID 911.

stanford.edu

plato.stanford.edu

Phylogenetic Inference. Metaphysics Research Lab, Stanford University. 15 February 2024. {{cite book}}: |website= ignored (help)

tau.ac.il

cs.tau.ac.il

Itzik, Peer (1 January 2001). "Phylogenetic Trees". www.cs.tau.ac.il.

web.archive.org

Darwin's Tree of Life Archived 13 March 2014 at the Wayback Machine
Heggarty, Paul (2006). "Interdisciplinary Indiscipline? Can Phylogenetic Methods Meaningfully Be Applied to Language Data — and to Dating Language?" (PDF). In Peter Forster; Colin Renfrew (eds.). Phylogenetic Methods and the Prehistory of Languages. McDonald Institute Monographs. McDonald Institute for Archaeological Research. Archived from the original (PDF) on 28 January 2021. Retrieved 19 January 2021.

wiktionary.org

en.wiktionary.org

from Greek φυλή/φῦλον [phylé/phylon] "tribe, clan, race", and γενετικός [genetikós] "origin, source, birth" Liddell, Henry George; Scott, Robert; Jones, Henry Stuart (1968). A Greek-English lexicon (9 ed.). Oxford: Clarendon Press. p. 1961.

worldcat.org

search.worldcat.org

Herberts, Cameron; Annala, Matti; Sipola, Joonatan; Ng, Sarah W. S.; Chen, Xinyi E.; Nurminen, Anssi; Korhonen, Olga V.; Munzur, Aslı D.; Beja, Kevin; Schönlau, Elena; Bernales, Cecily Q.; Ritch, Elie; Bacon, Jack V. W.; Lack, Nathan A.; Nykter, Matti (August 2022). "Deep whole-genome ctDNA chronology of treatment-resistant prostate cancer". Nature. 608 (7921): 199–208. Bibcode:2022Natur.608..199H. doi:10.1038/s41586-022-04975-9. ISSN 1476-4687. PMID 35859180. S2CID 250730778.
Schwartz, Russell; Schäffer, Alejandro A. (April 2017). "The evolution of tumour phylogenetics: principles and practice". Nature Reviews Genetics. 18 (4): 213–229. doi:10.1038/nrg.2016.170. ISSN 1471-0056. PMC 5886015. PMID 28190876.
Ní Leathlobhair, Máire; Lenski, Richard E. (2022). "Population genetics of clonally transmissible cancers". Nature Ecology & Evolution. 6 (8): 1077–1089. Bibcode:2022NatEE...6.1077N. doi:10.1038/s41559-022-01790-3. ISSN 2397-334X. PMID 35879542.
Bernard, EJ; Azad, Y; Vandamme, AM; Weait, M; Geretti, AM (2007). "HIV forensics: pitfalls and acceptable standards in the use of phylogenetic analysis as evidence in criminal investigations of HIV transmission". HIV Medicine. 8 (6): 382–387. doi:10.1111/j.1468-1293.2007.00486.x. ISSN 1464-2662. PMID 17661846. S2CID 38883310.
Archibald, J. David (1 August 2009). "Edward Hitchcock's Pre-Darwinian (1840) "Tree of Life"". Journal of the History of Biology. 42 (3): 561–592. doi:10.1007/s10739-008-9163-y. ISSN 1573-0387. PMID 20027787. S2CID 16634677.
Cavalier-Smith, Thomas (12 January 2010). "Deep phylogeny, ancestral groups and the four ages of life". Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365 (1537): 111–132. doi:10.1098/rstb.2009.0161. ISSN 1471-2970. PMC 2842702. PMID 20008390.
Tassy, P.; Fischer, M. S. (2021). ""Cladus" and clade: a taxonomic odyssey". Theory in Biosciences. 140 (1): 77–85. doi:10.1007/s12064-020-00326-2. ISSN 1431-7613. PMC 7583691. PMID 33095417.
Waddington, C. H. (1948). "Neuere Probleme der Abstammungslehre Die Transspezifische Evolution". Nature. 162 (4130): 979–980. Bibcode:1948Natur.162..979W. doi:10.1038/162979a0. ISSN 1476-4687.
Elton, C. S. (1960). "Evolutionary Divergence". Nature. 187 (4736): 446. Bibcode:1960Natur.187..446E. doi:10.1038/187446a0. ISSN 1476-4687.
Hennig, Willi (1950). Grundzüge einer Theorie der Phylogenetischen Systematik [Basic features of a theory of phylogenetic systematics] (in German). Berlin: Deutscher Zentralverlag. OCLC 12126814.^{[page needed]}
Wagner, Warren Herbert (1952). "The fern genus Diellia: structure, affinities, and taxonomy". University of California Publications in Botany. 26 (1–6): 1–212. OCLC 4228844.
Huxley, Julian (1957). "The Three Types of Evolutionary Process". Nature. 180 (4584): 454–455. Bibcode:1957Natur.180..454H. doi:10.1038/180454a0. ISSN 1476-4687.
Colijn, Caroline; Gardy, Jennifer (1 January 2014). "Phylogenetic tree shapes resolve disease transmission patterns". Evolution, Medicine, and Public Health. 2014 (1): 96–108. doi:10.1093/emph/eou018. ISSN 2050-6201. PMC 4097963. PMID 24916411.
Pagel, Mark (2017). "Darwinian perspectives on the evolution of human languages". Psychonomic Bulletin & Review. 24 (1): 151–157. doi:10.3758/s13423-016-1072-z. ISSN 1069-9384. PMC 5325856. PMID 27368626.
Bowern, Claire (14 January 2018). "Computational Phylogenetics". Annual Review of Linguistics. 4 (1): 281–296. doi:10.1146/annurev-linguistics-011516-034142. ISSN 2333-9683.
Retzlaff, Nancy; Stadler, Peter F. (2018). "Phylogenetics beyond biology". Theory in Biosciences. 137 (2): 133–143. doi:10.1007/s12064-018-0264-7. ISSN 1431-7613. PMC 6208858. PMID 29931521.
Hoffmann, Konstantin; Bouckaert, Remco; Greenhill, Simon J; Kühnert, Denise (25 November 2021). "Bayesian phylogenetic analysis of linguistic data using BEAST". Journal of Language Evolution. 6 (2): 119–135. doi:10.1093/jole/lzab005. hdl:1885/311145. ISSN 2058-458X.
Spencer, Matthew; Davidson, Elizabeth A; Barbrook, Adrian C; Howe, Christopher J (21 April 2004). "Phylogenetics of artificial manuscripts". Journal of Theoretical Biology. 227 (4): 503–511. Bibcode:2004JThBi.227..503S. doi:10.1016/j.jtbi.2003.11.022. ISSN 0022-5193. PMID 15038985.